Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F09
         (1173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.02c |||conserved protein|Schizosaccharomyces pombe|chr 1...   145   9e-36
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    31   0.23 
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    31   0.31 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   6.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   6.6  

>SPAC4A8.02c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 142

 Score =  145 bits (352), Expect = 9e-36
 Identities = 65/130 (50%), Positives = 91/130 (70%)
 Frame = +2

Query: 221 QRKLNLRPQHRGVHLVTEEILKQVPELSQFAVGLCHIQIMHTSASLALNESWDPNVRDDM 400
           QR + L  + +G +++T +++K++PEL  F+ G  +  I HTSA+L +NE+WD + R DM
Sbjct: 5   QRIITLDRRSKGFYIITNDLVKKLPELKSFSSGTVNFFIQHTSAALTINENWDADTRADM 64

Query: 401 EMMLNKIVPEGLPYRHSCEGPDDMPAHVKACFLGSSLTIPITDGKLNLGTWQGVWLCEHR 580
             +L+KIVPE   YRH+ EG DDMPAHVK+  +G SLT+PIT+GKL+LGTWQ + L E R
Sbjct: 65  NDILDKIVPESAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLAEFR 124

Query: 581 NHAGSRKIWC 610
               SR I C
Sbjct: 125 RQPHSRTIVC 134


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 127 YYRFCFRGRPVAIYKIKHGLEPRNSDWI 210
           +Y FCFR R + +      +EPR ++WI
Sbjct: 459 FYIFCFRWRELCVSDESESMEPRPNEWI 486


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 685 EHDAADTGDSGESRRQPDSVTTICTTPNLST--ASMISVFTQPNALPCTQIKFSI-SDGD 515
           E+     GDS    +QPD  TT+  + NL+   +S+ S+ T+   LP  ++     + GD
Sbjct: 189 ENGKDQNGDSSLKEKQPDVETTVTKSANLNALRSSLSSLLTESIDLPIDEVSLEFGNQGD 248


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -3

Query: 868  DKEIFHAEYQNINLMYI 818
            D+ ++HAE QN++++YI
Sbjct: 2909 DEYLYHAEIQNVDILYI 2925


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 707 RDPAHALAPLLQEHAEVNPAPHTPRPTYQTFLT 805
           R PAH +      H +  P  H P P    FL+
Sbjct: 263 RSPAHPIYQTQHSHYDETPTSHHPDPARLNFLS 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,859,716
Number of Sequences: 5004
Number of extensions: 80605
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)