Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F09
         (1173 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)                     32   0.77 
SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)               30   4.1  
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    29   7.1  
SB_33882| Best HMM Match : PsbI (HMM E-Value=0.46)                     29   7.1  
SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6)                 29   9.5  
SB_53170| Best HMM Match : DUF705 (HMM E-Value=5.1)                    29   9.5  
SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.5  

>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
          Length = 991

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 730 RECVCGVAPPARS*LEHDAADTGDSGESRRQPDSV 626
           R C C  APP +   + D     DSGES   P  V
Sbjct: 649 RRCFCRYAPPRKEGEDQDVESKADSGESTTAPQEV 683


>SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)
          Length = 660

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 383 NVRDDMEMMLNKIVPEGLPYRHSCEGPDDMPAHVKACFLGSSLTIPITDGKLNLGTWQG 559
           N+      + NKI  E +         D  P H  A  LG S +I  TD ++++  W G
Sbjct: 227 NIEHIASCVQNKITAERIRRMRGLPPEDSKPKHKSADDLGDSFSIQ-TDDRISVSYWDG 284


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 256 APVLWPQIQLPLKPRGSNLNSSVRGHV*FYKSLQDDRENKNGSTQHHLD*PFTQAKPQL 80
           A +L  Q Q P+     N N    G      S +D+     G++  H+D  F+Q+KP +
Sbjct: 697 ASILTIQHQAPVNLPNGNSNQQSLGQA--QTSNEDNSRGSEGTSNDHMDGLFSQSKPTM 753


>SB_33882| Best HMM Match : PsbI (HMM E-Value=0.46)
          Length = 107

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 785 TYQTFLT*ERQYVHKIDILIFCVEYFFILL*VLVXNTCQN 904
           T Q F   E+ Y+  I I +F +  FF++L V V  +C N
Sbjct: 61  TKQCFGNYEKDYMKIIPIFVFVLINFFVILLVFVIYSCFN 100


>SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6)
          Length = 287

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 713 PAHALAPLLQEHAEVNPAP 769
           PAHA    + EHA+VNP P
Sbjct: 150 PAHAQVDPIPEHAQVNPTP 168


>SB_53170| Best HMM Match : DUF705 (HMM E-Value=5.1)
          Length = 257

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 172 IKHGLEPRNSDWIRVVSKEAEFEA 243
           +K   EP+N    R+VSK+A FEA
Sbjct: 82  VKGRKEPKNQQLFRIVSKDAPFEA 105


>SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -1

Query: 858 YSTQNIKISILCTYCLSYVRNVWYVGRGVCGAGFTSACSWRRGASACA 715
           YS  N+  ++L   C S     W   RG C        SW+R  SACA
Sbjct: 251 YSPINVNYAVLGDVCGSG----WNYFRGYCYKTSDICLSWKRAQSACA 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,672,917
Number of Sequences: 59808
Number of extensions: 655183
Number of successful extensions: 1627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3610061010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)