Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F08
         (1224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...   118   2e-27
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    28   3.0  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   5.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   9.3  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   9.3  

>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  118 bits (283), Expect = 2e-27
 Identities = 64/189 (33%), Positives = 107/189 (56%), Gaps = 5/189 (2%)
 Frame = +1

Query: 298 KKLEQLFNKYRDQQELDKITADGVMKFLEDLNLSPESILVLIIAWKCKAAVQCEFTKDEF 477
           K+L  +F+++  +++ D I  DG ++    L++S E    L++++  K+    EF ++ F
Sbjct: 52  KQLNNVFSQFSSKEDKDLIELDGSVQLFTALDISLEDPETLLVSYFLKSPRMGEFHRESF 111

Query: 478 IMGMVELAVDGLDKLKAKLPT-LESELKDLNKFKDFYHFTFNYAKNAGQKGLDLDMAIVY 654
           + G + L+   LD+LK  +   ++    D +  K  Y +T+  A + G+K L   +AI +
Sbjct: 112 VEGALNLSTTSLDQLKLAIKEKVQVWRSDASLQKAIYIYTYPLACDKGKKTLSTSIAIEF 171

Query: 655 WNIVLRGRFKFLDAWCKFLTEHH--KRSIPKDTWNLLLDFATQI--DDGMSNYDAEGAWP 822
           + I+L+  F  LD W  FL      ++S+PKDTWN L DF+  +  D   SNYD EGAWP
Sbjct: 172 FQILLKDTFPLLDDWIAFLKVSPIIEKSLPKDTWNELWDFSVFVKSDPNCSNYDFEGAWP 231

Query: 823 VLIDDFVEW 849
            LID+FV +
Sbjct: 232 TLIDEFVSY 240


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = +1

Query: 292 DRKKLEQLFNKYRDQQELDKITADGVMKFLEDLNLSPESILVLIIAWKCKAAVQCEF-TK 468
           ++   +QLF K  D+Q++  IT +  + FLE   L+P+   VL   W+   A    F T 
Sbjct: 9   EQTAFDQLF-KIADKQDIGVITGEEAVPFLEKSGLAPQ---VLGQIWQIADAENRGFLTF 64

Query: 469 DEFIMGM--VELAVDGLD---KLKAKLP 537
             F++ M  V LA + L    K   K+P
Sbjct: 65  SGFVIAMRLVALAQEKLPFDYKKSGKIP 92


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 521 NLSNPSTANS-TMPIINSSLVNSHCTAALHFHAIIKTKIDSGLKFRSSKNFMTPSA 357
           N  NPST N  T P+I ++ + S   A    H  ++T      KFR  +    PSA
Sbjct: 484 NDGNPSTMNFLTSPVIVAAKIFSSDLAFDPTHDTLQTPDGKAFKFRPPQGVELPSA 539


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 241 YFQNPDAYYKXSIKTSVDRKKLEQLFNKYRDQQELDKIT 357
           Y +NP+      +     RK++++LF+  +D   LDK T
Sbjct: 329 YTRNPELRTSHKLAERKRRKEIKELFDDLKDALPLDKST 367


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +1

Query: 199  LSQNDWKLXLASDNYFQNPDAYYKXSIKTSVDRKKLEQLFNKYRD 333
            L  N+WK  +         DA     + +  +  K EQL  K+ D
Sbjct: 915  LHANEWKCFVRDTKILAEEDALSNQDLNSQDESMKAEQLHKKFDD 959


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 613 AGQKGLDLDMAIVYWNIVLRGRFKFLDAWCKFLTEHHKRSIPKDT 747
           A  K LDLD+  VY    + G+  FL+        HH   IPK T
Sbjct: 440 AQYKALDLDLTYVYSE--MPGQLLFLNQLGVSYIRHHIFPIPKPT 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,787,172
Number of Sequences: 5004
Number of extensions: 73992
Number of successful extensions: 240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)