Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F08
(1224 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694... 212 6e-55
07_03_1373 - 26110436-26110584,26110585-26110752,26110829-261108... 108 1e-23
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512... 93 4e-19
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791... 29 9.8
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 29 9.8
>06_01_0903 -
6939672-6939782,6940051-6940110,6940221-6940322,
6940464-6940513,6940686-6940750,6940849-6940931,
6941117-6941140,6941798-6941856,6942041-6942174,
6942823-6942884,6942908-6942976
Length = 272
Score = 212 bits (517), Expect = 6e-55
Identities = 100/246 (40%), Positives = 153/246 (62%), Gaps = 1/246 (0%)
Frame = +1
Query: 115 HQLKSSQXXKVXQFVAFTQXRXSTAIYCLSQNDWKLXLASDNYFQNPDAYYKXSIKTSVD 294
H+L KV QF+ T A+ L +DW L A D ++ P + S+ S
Sbjct: 24 HKLGRGSRDKVQQFMTITGASEKVALQALKASDWHLEGAFDFFYSQP----QISLTNS-- 77
Query: 295 RKKLEQLFNKYRDQQELDKITADGVMKFLEDLNLSPESILVLIIAWKCKAAVQCEFTKDE 474
+ LE L+N+Y++ ++D I +GV +F DL + P+ I++L+I+W KAA CEFT+ E
Sbjct: 78 -RHLEDLYNRYKEP-DVDMIMVEGVSQFCTDLQVDPQDIVMLVISWHMKAATMCEFTRQE 135
Query: 475 FIMGMVELAVDGLDKLKAKLPTLESELKDLNKFKDFYHFTFNYAKNAGQKGLDLDMAIVY 654
FI G+ + VD ++KL+ KLP+L +E+KD +KF++ Y+F F +A+ GQK L L+ A+
Sbjct: 136 FIGGLQSIGVDSIEKLREKLPSLRAEIKDDHKFREIYNFAFAWAREKGQKSLALETALGM 195
Query: 655 WNIVLRGR-FKFLDAWCKFLTEHHKRSIPKDTWNLLLDFATQIDDGMSNYDAEGAWPVLI 831
W ++ R + +D WC+FL H ++I +DTW+ LL+F ID +SNYD EGAWP LI
Sbjct: 196 WQLLFAERHWPLIDHWCQFLQVRHNKAISRDTWSQLLEFVKTIDPQLSNYDEEGAWPYLI 255
Query: 832 DDFVEW 849
D+FVE+
Sbjct: 256 DEFVEY 261
>07_03_1373 -
26110436-26110584,26110585-26110752,26110829-26110896,
26111755-26111800,26111929-26112025,26112802-26112884,
26112987-26113062,26113147-26113195,26113517-26113601,
26114247-26114331
Length = 301
Score = 108 bits (259), Expect = 1e-23
Identities = 53/145 (36%), Positives = 86/145 (59%), Gaps = 8/145 (5%)
Frame = +1
Query: 484 GMVELA--VDGLDKLK----AKLPTLES--ELKDLNKFKDFYHFTFNYAKNAGQKGLDLD 639
G+ EL+ +DG++ L+ + +P L S +L D ++F FY F F ++ GQK + +
Sbjct: 42 GLAELSQVIDGMEGLRDAIFSDIPKLMSALDLDDAHRFSIFYDFVFFISRENGQKNISVQ 101
Query: 640 MAIVYWNIVLRGRFKFLDAWCKFLTEHHKRSIPKDTWNLLLDFATQIDDGMSNYDAEGAW 819
A+ W +VL GRF LD WC F+ ++ + +I +D W LL F+ +++ + YD +GAW
Sbjct: 102 RAVGAWRMVLNGRFWLLDRWCNFVEKYQRYNITEDVWQQLLAFSRCVNEDLEGYDPKGAW 161
Query: 820 PVLIDDFVEWCQKQELTLDGVKALE 894
PVL+DDFVE + + D A+E
Sbjct: 162 PVLVDDFVEHMHRIYNSCDCSSAME 186
>08_02_0801 +
21349434-21349438,21349952-21349978,21351175-21351249,
21351333-21351369,21351469-21351552,21351821-21351881,
21351961-21352067,21352162-21352227,21352366-21352461
Length = 185
Score = 93.1 bits (221), Expect = 4e-19
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 4/175 (2%)
Frame = +1
Query: 352 ITADGVMKFLEDLNLSPESILVLIIAWKCKAAVQCEFTKDEFIMGMVELAVDGLDKLKAK 531
I+ +G+ L + + +L++AWK Q FT DE+ G+ L D ++KLK
Sbjct: 10 ISPEGIETLCSHLEVPHTDVRILMLAWKMGCEKQGYFTLDEWRSGLKALRADTINKLKKA 69
Query: 532 LPTLESELKDLNKFKDFYHFTFNYAKNAGQKG-LDLDMAIVYWNIVLRGRFK-FLDAWCK 705
P L E+ + F+DFY + F Y +K +++ +A N+VL +F+ +D
Sbjct: 70 FPELVQEVTRPSNFQDFYPYAFRYCLTEDKKKCIEIPVACELLNLVLGLQFRPQVDKLVN 129
Query: 706 FLTEHHK-RSIPKDTWNLLLDFATQID-DGMSNYDAEGAWPVLIDDFVEWCQKQE 864
+L + + I D W L F +I+ + NYD++ AWP+++D+FVEW ++ +
Sbjct: 130 YLKHQSEYKVINMDQWMGFLRFCNEINFPSLDNYDSDLAWPLILDNFVEWLRENK 184
>01_03_0205 +
13777918-13778015,13778402-13778624,13779022-13779198,
13779277-13779437,13779520-13780519,13780923-13781069,
13781149-13781376,13781471-13781628,13781807-13782161
Length = 848
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 622 KGLDLDMAIVYWNIVLRGRFKFLDAWCKFLTEHHKRSIPKDTW-NLLLDFATQIDDGMS 795
+G +V ++LR +F L+AW L + H+R+ P D + +LLD ++ +S
Sbjct: 714 EGKSRSATVVLAYLMLRKKFTLLEAW-NMLKKVHRRAHPNDGFAKVLLDLDKKLHGKIS 771
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 280 KTSVDRKKLEQLFNKYRDQQELDKITADGVMKFLEDLNLSPESILVLIIAWK 435
K S + K+ Q+F + E +++ AD V KFL DL + + I+V + +W+
Sbjct: 732 KESFESCKI-QVFCIAEEDTEAEELKAD-VKKFLYDLRMQADVIVVTVKSWE 781
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,180,002
Number of Sequences: 37544
Number of extensions: 468543
Number of successful extensions: 1297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3759607596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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