Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F08
         (1224 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    26   0.58 
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    24   2.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.4  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   7.2  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   9.5  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   9.5  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   9.5  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   9.5  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   9.5  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   9.5  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   9.5  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 208 NDWKLXLASDNYFQNPDA-YYKXSIKTSVDRKKLEQLFNKYRDQQE-LDKITA 360
           N  K   +S N  +N  + Y++   K    RK++EQ+  + R+Q+E  D++T+
Sbjct: 36  NICKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTS 88


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 655 WNIVLRGRFKFLDAWCKFLTEHHKR 729
           WN +LR  F  LD W + L  H K+
Sbjct: 28  WNTLLRPNF--LDGWYQTLQTHMKK 50


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 563 KSFNSDSNVGNLAFNLSNPSTANSTMPIINSSLVNSHCTAAL 438
           +S  S +  GN+++  +N ++ NS + I  +SLV++    +L
Sbjct: 712 ESTQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSL 753


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 717 APQKIYTKRHMESFTRLCNTNRRWH 791
           AP ++ T+   ES   LCNT   WH
Sbjct: 453 APPQLPTE---ESVDALCNTLHHWH 474


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
 Frame = +1

Query: 76  AQVLRNSANPV-KMHQLKSSQXXKVXQFVAFTQXRXSTAIYCLSQNDWKLXLASDNYFQN 252
           +Q++ + A+ + +M QL         Q  +F Q     ++Y   Q       +S  +  N
Sbjct: 61  SQMMISPASGIHQMQQLLQQHILSPTQLQSFMQQH---SLYLQQQQQQHHQDSSSEHASN 117

Query: 253 PDAY-YKXSIK------TSVDRKKLEQLFNKYRDQQELDKI 354
            + + Y  S+K        + RKKLEQ   + ++Q +L+ I
Sbjct: 118 QERFGYFSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVI 158


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 RRGHEILRRPKLKSRINFSFNYS 428
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIVSSLSNNYNYS 92


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 RRGHEILRRPKLKSRINFSFNYS 428
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 RRGHEILRRPKLKSRINFSFNYS 428
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 RRGHEILRRPKLKSRINFSFNYS 428
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 RRGHEILRRPKLKSRINFSFNYS 428
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 RRGHEILRRPKLKSRINFSFNYS 428
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 RRGHEILRRPKLKSRINFSFNYS 428
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 RRGHEILRRPKLKSRINFSFNYS 428
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,471
Number of Sequences: 438
Number of extensions: 4926
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41661861
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)