Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F05
         (1253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    30   0.58 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   7.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   9.5  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
 Frame = -1

Query: 632 VLENILILQWCLLVLPSCSWRRYRYCNNNYHHV---LPLATRIQFRTII*PTEFITGFFS 462
           V+  ++ + W L+V P   WRR+    N Y  +   LP          +   E     F 
Sbjct: 626 VIAALICVPWLLIVKPFVLWRRHSNEENKYQSLNSDLPNVDEADALMAVDSQEKQAEPFE 685

Query: 461 VGQGVLXSAMHC--SCKGSCXQTLSD---XALELASNKL 360
           +G+ V+   +H    C G    T S     AL LA N+L
Sbjct: 686 LGEVVIHQVIHTIEFCLGCVSHTASYLRLWALSLAHNQL 724


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 987 IDFLLMCIKCGSSEYRLLXSLILGIXYRPVRTCLSARMYNVFY 859
           I  +L C  C S+    L   +  I Y P+   L  RM+++ Y
Sbjct: 434 IQLMLSCTTCVSNMMEALPLCMAKIAYSPIVRILCERMFDMQY 476


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -1

Query: 623 NILILQWCLLVLPSCSWRRYR---YCNN--NYHHVLPLATRIQFRTI 498
           + L++Q C+  LPS  W++Y+    CN+  N  H   L+T  + R +
Sbjct: 213 DFLLMQQCVKQLPSNCWQKYKARQICNDIMNTFHPNDLSTINECRNL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,511,168
Number of Sequences: 5004
Number of extensions: 61383
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)