Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F04
         (1213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    27   5.2  

>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -2

Query: 243 LKGNPGPGGSSFPWLTNGDSTAXSK*GDXKDAXXSV*ERRLMQRRECD*QPVRTDDLRR- 67
           + G  G   S  PW T  +  A ++ G   DA  +  E+R+ Q+R+ D    R  +L+R 
Sbjct: 2   VNGTKGVCVSGKPWKT--EKKAYNRSG-LADAQRTPYEKRMEQKRKLDEIKEREKELKRE 58

Query: 66  KERKTTATIESXKGR 22
           KE +  A  E  + R
Sbjct: 59  KEEQRAAHAEKIRTR 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,318
Number of Sequences: 5004
Number of extensions: 24629
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)