Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F04
         (1213 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0288 + 29001228-29001399,29001493-29001723,29001817-290019...    29   7.4  

>05_07_0288 +
           29001228-29001399,29001493-29001723,29001817-29001914,
           29002687-29002873,29003068-29003198,29003282-29003908
          Length = 481

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 20  GLPLXLSIVAVVFLSFRLKSSVRTGCQSHSRRCINRR 130
           GL    ++ AV F ++ L S V   C++H RR I  R
Sbjct: 91  GLVALTAVAAVTFYAYYLMSRVLDHCEAHGRRHIRFR 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,889
Number of Sequences: 37544
Number of extensions: 224705
Number of successful extensions: 862
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3713048988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)