Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F04
         (1213 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   5.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   9.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 315  SATLFRPFSARARYVLKDKQGRSXLKGNPGPGGSSFPWLTNG 190
            +AT  RP +A  +  LK ++  +   G PGP G   P    G
Sbjct: 1111 AATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGIKMPSFMEG 1152


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 666 LADSXXQXKPPTPPPXP 616
           L DS    KP  PPP P
Sbjct: 332 LGDSDTPPKPAPPPPPP 348


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 267 KDKQGRSXLKGNPGPGG 217
           KDK   + + G+PG GG
Sbjct: 276 KDKPNSTTMNGSPGSGG 292


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 43  CCRRFSLLSSQIVCPDRLSVTLSPLHQ 123
           C     LLS  ++C +++S T+ P  Q
Sbjct: 64  CPDGLKLLSDGLMCVEKVSTTIVPTTQ 90


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 648  QXKPPTPPPXP 616
            Q +PP PPP P
Sbjct: 1352 QQQPPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,080
Number of Sequences: 438
Number of extensions: 2487
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41452344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)