Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F03
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    31   0.44 
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    28   2.3  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   7.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   9.4  

>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 632 TSSTVVHHQFWIVNNVRIRHVLGFHEIFEHVGPVPSFSGD*G 507
           T++T V++    VN   ++HV+   EIF +  P+  F GD G
Sbjct: 172 TATTAVNNSTNYVNPAPLQHVMPNAEIFSNTPPLKRFRGDAG 213


>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 552 YFMKTEHMTDTNIVNNPELMVYHGRGGAIEVSGTNEVMFSIKKFLQAFEEL 704
           Y    EH  D + V      +Y  +   + V+ TNE++ S+ +F   F E+
Sbjct: 223 YQFSLEHSVDEDCVTKSLHTLYLFQKNKVSVANTNELLKSLVQFKSEFPEI 273


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 341 SKFGRLEFYQRGKQYYKPSLKKXNRATTSREXAGWKRLLES 463
           S  GR+E +  G+Q+Y+   +  N +T +   A  +R+++S
Sbjct: 128 SSSGRVELFDMGRQFYERYHELFNASTYNIYTAAQQRVVDS 168


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 415 SIPLFKAWLVILFSTLVKFQSTELAFRVSLNAGILQHR 302
           S+PL K+WL I F+        +L F+V   A IL H+
Sbjct: 9   SLPLVKSWLAITFA-----NEEDLPFQVPQIADILVHQ 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,339,568
Number of Sequences: 5004
Number of extensions: 90043
Number of successful extensions: 216
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)