Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F03
(1240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 38 0.016
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 38 0.016
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 37 0.029
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 36 0.050
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 36 0.087
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 36 0.087
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 34 0.27
06_02_0210 - 13039479-13039566,13039674-13039770,13040470-130405... 33 0.61
04_04_1481 - 33894175-33894537,33894618-33894739,33894841-33895225 31 1.4
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 29 5.7
01_07_0275 + 42434082-42435152 29 5.7
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 29 10.0
01_06_0851 + 32455364-32458050,32458883-32458922 29 10.0
>10_08_0682 + 19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 37.9 bits (84), Expect = 0.016
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 945 EVILSAGTFNTPKLLMLSGVGRSXH 1019
EVI+SAGT +P+LLMLSGVG H
Sbjct: 279 EVIVSAGTLGSPQLLMLSGVGPQAH 303
>02_05_0304 + 27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 37.9 bits (84), Expect = 0.016
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3
Query: 936 ADREVILSAGTFNTPKLLMLSGVGRSXH 1019
A E+ILSAG +P+LLMLSGVG + H
Sbjct: 265 ARNEIILSAGALGSPQLLMLSGVGPADH 292
>04_04_0862 + 28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 37.1 bits (82), Expect = 0.029
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 945 EVILSAGTFNTPKLLMLSGVGRSXH 1019
E+ILSAG +P+LLMLSGVG + H
Sbjct: 275 EIILSAGAMGSPQLLMLSGVGPADH 299
>08_02_0598 - 19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 36.3 bits (80), Expect = 0.050
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Frame = +3
Query: 807 LLNNANSTSLHILKDTFVTKIIIENGT------AIGIEAVKDDKTFLFYA------DREV 950
LL N +L +L VT+II IG+E KD+ +A D E+
Sbjct: 235 LLAAGNHNNLRVLLHASVTRIIFNTEQEHRKPRTIGVE-FKDENGGQQHAFLTRNRDSEI 293
Query: 951 ILSAGTFNTPKLLMLSGVG 1007
I+SAG +P+LL+LSG+G
Sbjct: 294 IISAGAIGSPQLLLLSGIG 312
>06_03_0980 + 26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 35.5 bits (78), Expect = 0.087
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 3/197 (1%)
Frame = +3
Query: 426 RGKXLGGSGSLNHMVYARGFPSDYHEWASIAGETWNWTNVLKYFMKTEHMTDTNIVNNPE 605
R + LGG+ S+N Y+R P D+ GE NW +K + + + P
Sbjct: 132 RARVLGGATSINAGFYSRAHP-DWFRSHGEGGEAMNWD--MKLVNSSYEWVERELAFQPV 188
Query: 606 LMVYHG--RGGAIEVSGTNEVMFSIKKFLQAFEELGFKTVPDMTYPNSIGAGCFSHTIRN 779
+ + R G +E + T F++ + ++G T D + A + R
Sbjct: 189 VRGWQAAVRAGLLEANVTPWNGFTMDHV--SGTKVGATTF-DSSGRRRSAADLLAFA-RP 244
Query: 780 GERDSSLRALLNNANSTSLH-ILKDTFVTKIIIENGTAIGIEAVKDDKTFLFYADREVIL 956
G ++RA + + + + + + + + + + L EVIL
Sbjct: 245 GRLRVAIRATVTRIIMSPIEPVARRGRSPQPAVAASGVVYQDRLLQQHHALLRPGGEVIL 304
Query: 957 SAGTFNTPKLLMLSGVG 1007
SAG+ +P+LL+LSG+G
Sbjct: 305 SAGSLGSPQLLLLSGIG 321
>03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 35.5 bits (78), Expect = 0.087
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 936 ADREVILSAGTFNTPKLLMLSGVG 1007
A EVI++AGT +P+LLMLSGVG
Sbjct: 271 AKSEVIVTAGTLGSPQLLMLSGVG 294
>09_03_0047 - 11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 33.9 bits (74), Expect = 0.27
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 939 DREVILSAGTFNTPKLLMLSGVG 1007
D E+I+SAG +P+LL+LSG+G
Sbjct: 276 DSEIIVSAGAIGSPQLLLLSGIG 298
>06_02_0210 -
13039479-13039566,13039674-13039770,13040470-13040545,
13041222-13041356
Length = 131
Score = 32.7 bits (71), Expect = 0.61
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 137 QFFKGALCXRLKGIRAMVCGLXSCLGRGAAGGLFSSA 247
+F GALC +G R ++CG SC G G GG S++
Sbjct: 92 RFKAGALCWLCRGKREILCG--SCNGAGFLGGFMSTS 126
>04_04_1481 - 33894175-33894537,33894618-33894739,33894841-33895225
Length = 289
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 438 LGGSGSLNHMVYARGFPSDYHEWASIAGETWNWT 539
+GG G+ H V+ GFPS++ W S A ++ T
Sbjct: 208 VGGDGAHRHAVHG-GFPSNFQRWGSAAATSYTIT 240
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -3
Query: 830 CTICVVKESPQRAVAFAISDGVRKTSC-----TDRVWVSHIRNCLE 708
C+ C E P RAV +I GV +T C +DR + H LE
Sbjct: 779 CSPCPTNELPHRAVYISIRGGVTETPCPYKCVSDRYRMPHCFTALE 824
>01_07_0275 + 42434082-42435152
Length = 356
Score = 29.5 bits (63), Expect = 5.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 126 SHCXNSSKVLFVNVSKAFVQWFAGXLRV 209
+HC + K LF V +WFAG L+V
Sbjct: 211 AHCTSFDKRLFPQVDPTMDKWFAGHLKV 238
>02_05_0939 +
32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 789 DSSLRALLNNANSTSLHILKD-----TFVTKIIIENGTAIGIEAVKDDKT 923
D+S RA++N++ S S+ + + T TK+I++ T +G A DD+T
Sbjct: 135 DASYRAMVNDSRSQSILVSGESGAGKTETTKLIMQYLTYVGGRAAIDDRT 184
>01_06_0851 + 32455364-32458050,32458883-32458922
Length = 908
Score = 28.7 bits (61), Expect = 10.0
Identities = 20/78 (25%), Positives = 31/78 (39%)
Frame = +2
Query: 185 MVCGLXSCLGRGAAGGLFSSAVQFFAAPQCLVGETWPKASVLQNTSVQXNSKSKFGRLEF 364
++ + +C+ RG GG SSA AP G P+ +L + GR+
Sbjct: 12 LLLAVAACVARGQGGGNSSSAAA--PAPAAGAGPFVPRDDILLDCGATGKGNDTDGRVWS 69
Query: 365 YQRGKQYYKPSLKKXNRA 418
G +Y SL + A
Sbjct: 70 GDAGSKYAPASLGSASAA 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,037,319
Number of Sequences: 37544
Number of extensions: 611238
Number of successful extensions: 1422
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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