Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F03
         (1240 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...   120   1e-26
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...   118   3e-26

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
            protein.
          Length = 594

 Score =  120 bits (289), Expect = 1e-26
 Identities = 82/246 (33%), Positives = 119/246 (48%), Gaps = 3/246 (1%)
 Frame = +3

Query: 285  KLGQKLLCCKIPAFXETLKASSVDWNFTSVENNITSQALKXGIEQQPRGKXLGGSGSLNH 464
            + G K L  KI      L A+  D  +    +    + L   +   PRG+  GGS SLN 
Sbjct: 78   RAGSKRLSWKIH-MPAALVANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNA 136

Query: 465  MVYARGFPSDYHEWASIAGETWNWTNVLKYFMKTEHMTDTNIVNNPELMVYHGRGGAIEV 644
            MVY RG   DY  W       W++ + L YF K +        +      Y G  G + V
Sbjct: 137  MVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQG-------HELGASRYRGADGPLRV 189

Query: 645  SG--TNEVMFSIKKFLQAFEELGFKTVPDMTYPNSIGAGCFSHTIRNGERDSSLRALLNN 818
            S   TN  +     FL+A ++ G+    DM      G G    TI  G+R S+  A L+ 
Sbjct: 190  SRGKTNHPLHCA--FLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHP 247

Query: 819  ANS-TSLHILKDTFVTKIIIENGTAIGIEAVKDDKTFLFYADREVILSAGTFNTPKLLML 995
            A S T+L    +T V++++ E   A+G+E VK+ ++   YA +EVILS G  N+P+LLML
Sbjct: 248  ALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLML 307

Query: 996  SGVGRS 1013
            SG+G +
Sbjct: 308  SGIGNA 313


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
            protein.
          Length = 482

 Score =  118 bits (285), Expect = 3e-26
 Identities = 73/200 (36%), Positives = 104/200 (52%), Gaps = 3/200 (1%)
 Frame = +3

Query: 423  PRGKXLGGSGSLNHMVYARGFPSDYHEWASIAGETWNWTNVLKYFMKTEHMTDTNIVNNP 602
            PRG+  GGS SLN MVY RG   DY  W       W++ + L YF K +        +  
Sbjct: 11   PRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQG-------HEL 63

Query: 603  ELMVYHGRGGAIEVSG--TNEVMFSIKKFLQAFEELGFKTVPDMTYPNSIGAGCFSHTIR 776
                Y G  G + VS   TN  +     FL+A ++ G+    DM      G G    TI 
Sbjct: 64   GASRYRGADGPLRVSRGKTNHPLHCA--FLEATQQAGYPLTEDMNGFQQEGFGWMDMTIH 121

Query: 777  NGERDSSLRALLNNANS-TSLHILKDTFVTKIIIENGTAIGIEAVKDDKTFLFYADREVI 953
             G+R S+  A L+ A S T+L    +T V++++ E   A+G+E VK+ ++   YA +EVI
Sbjct: 122  EGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVI 181

Query: 954  LSAGTFNTPKLLMLSGVGRS 1013
            LS G  N+P+LLMLSG+G +
Sbjct: 182  LSGGAINSPQLLMLSGIGNA 201


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,343,590
Number of Sequences: 237096
Number of extensions: 3233883
Number of successful extensions: 7475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7471
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17614793600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)