Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F03
         (1240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   126   3e-31
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   3.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   7.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  126 bits (305), Expect = 3e-31
 Identities = 79/237 (33%), Positives = 116/237 (48%), Gaps = 1/237 (0%)
 Frame = +3

Query: 312  KIPAFXETLKASSVDWNFTSVENNITSQALKXGIEQQPRGKXLGGSGSLNHMVYARGFPS 491
            +IP+  +      +DW + +  N   +     G    PRGK LGG+   + M Y RG   
Sbjct: 109  EIPSNLQLYLGGDLDWKYYTT-NESHACLSTGGSCYWPRGKNLGGTTLHHGMAYHRGHRK 167

Query: 492  DYHEWASIAGETWNWTNVLKYFMKTEHMTDTNIVNNPELMVYHGRGGAIEVSGTNEVMFS 671
            DY  W       W+W  V+ Y++K+E+ T+ + V       YH  GG + V         
Sbjct: 168  DYERWVQQGAFGWSWDEVMPYYLKSENNTELSRVGTK----YHRSGGLMNVERFPYQPPF 223

Query: 672  IKKFLQAFEELGFKTVPDMTYPNSIGAGCFSHTIRNGERDSSLRALLNN-ANSTSLHILK 848
              K L+A EE GF    D++     G        RNG R SS RA +    N ++LH++ 
Sbjct: 224  AWKILKAAEEAGFGVSEDLSGDRINGFTVAQTISRNGVRLSSARAFITPFENRSNLHVIV 283

Query: 849  DTFVTKIIIENGTAIGIEAVKDDKTFLFYADREVILSAGTFNTPKLLMLSGVGRSXH 1019
            +  VTK+   N  A G+  + + +  + +A REVILSAG+ NTP+LLMLSG+G   H
Sbjct: 284  NATVTKVRTLNKRATGVNVLINGRRRIIFARREVILSAGSVNTPQLLMLSGIGPKEH 340


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 688 CRNFLMENITSFVPETSIAPPRPWYTINSGLLTMFVSVMCSV 563
           C N++ E     + ET++   +P    N+    M V  MC +
Sbjct: 178 CHNYMSELTVDILLETAMGVSKPTRDHNAFEYAMAVMKMCDI 219


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 688 CRNFLMENITSFVPETSIAPPRPWYTINSGLLTMFVSVMC 569
           C      NI  FVP   +    PW++   G L    S++C
Sbjct: 503 CVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLC 542


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 688 CRNFLMENITSFVPETSIAPPRPWYTINSGLLTMFVSVMC 569
           C      NI  FVP   +    PW++   G L    S++C
Sbjct: 556 CVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLC 595


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 759 FSHTIRNGERDSSLRALLNNANSTSLHILKDTFVTKIIIENGTAI 893
           ++HT+ +GERD+     L N     L  L    +   I+ N   I
Sbjct: 15  WNHTVSSGERDTRTEYYLPNWTDLVLAGLFTMLIIVTIVGNTLVI 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,855
Number of Sequences: 438
Number of extensions: 6623
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42262176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)