Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F01
(1195 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 40 0.005
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 38 0.021
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 37 0.036
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 36 0.048
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 36 0.063
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 35 0.11
04_04_0010 - 22137258-22137428,22137734-22137794,22137917-221379... 33 0.44
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 32 0.77
01_07_0251 + 42289617-42291241,42291424-42292156 29 5.5
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 29 9.5
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 39.5 bits (88), Expect = 0.005
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +2
Query: 116 IQCLSRALVPSAWHSVGPAAMGTVVAGXLKVLGINGLRVVDAXVMPKIIRGNTNAPVVMI 295
+Q R V + WH G +G VV +VLG+ GLRVVD+ N A V+M+
Sbjct: 511 LQQYCRETVMTIWHYHGGCHVGAVVDQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMML 570
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 37.5 bits (83), Expect = 0.021
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 131 RALVPSAWHSVGPAAMGTVVAGXLKVLGINGLRVVDAXVMPKIIRGNTNAPVVMI 295
R V + WH G +G VV +V+G++GLRV+D + + N A V+M+
Sbjct: 526 RDTVVTIWHYHGGCHVGKVVDQQYRVIGVSGLRVIDGSTLFRSPGTNPQATVMMM 580
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 36.7 bits (81), Expect = 0.036
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 131 RALVPSAWHSVGPAAMGTVVAGXLKVLGINGLRVVDAXVMPKIIRGNTNAPVVMI 295
R V + WH G +G VV +VLG++G+RVVD + N A V+M+
Sbjct: 512 RDTVITIWHYHGGCHVGKVVDQQHRVLGVSGVRVVDGSTFSRSPGTNPQATVMMM 566
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 36.3 bits (80), Expect = 0.048
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +2
Query: 131 RALVPSAWHSVGPAAMGTVVAGXLKVLGINGLRVVDAXVMPKIIRGNTNAPVVMIAEI 304
R V + WH G +G VV +VLGI LRV+D N A V+M+ +
Sbjct: 507 RDTVMTIWHYHGGCQVGRVVDRDYRVLGIEALRVIDGSTFNASPGTNPQATVMMLGRL 564
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 35.9 bits (79), Expect = 0.063
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 140 VPSAWHSVGPAAMGTVVAGXLKVLGINGLRVVDAXVMPKIIRGNTNAPVVMI 295
V + WH G +G VV +V G+ GLRV+D+ N A V+M+
Sbjct: 520 VMTIWHYHGGCHVGAVVDDDYRVFGVQGLRVIDSSTFKYSPGTNPQATVMML 571
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 35.1 bits (77), Expect = 0.11
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 140 VPSAWHSVGPAAMGTVVAGXLKVLGINGLRVVDAXVMPKIIRGNTNAPVVMIAE-IAADL 316
V + WH G G+VV +V + LRVVD + N A ++M+ I +
Sbjct: 513 VATLWHYHGGCVAGSVVDRDFRVFRVRALRVVDGSTFRETPGTNPQATIMMMGRYIGQKM 572
Query: 317 IKEHYSVSRTGTNLNN 364
I E +S + T+ ++
Sbjct: 573 IDERHSRRQVRTSTDS 588
>04_04_0010 -
22137258-22137428,22137734-22137794,22137917-22137984,
22138524-22138733,22138867-22138907,22139011-22139060,
22139260-22139348,22139468-22139542,22139791-22139882,
22140131-22140182,22140515-22140631,22141267-22141496,
22141618-22141672,22141781-22141900
Length = 476
Score = 33.1 bits (72), Expect = 0.44
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 85 ACSHFTARALDSMSVKGAGAIRLAFRGSCRYGHCSS 192
A SH A + V GAGA RL G+ GHCSS
Sbjct: 99 ASSHHGVAAASAAVVSGAGARRLLGEGTAGSGHCSS 134
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 32.3 bits (70), Expect = 0.77
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 140 VPSAWHSVGPAAMGTVVAGXLKVLGINGLRVVDAXVMPKIIRGNTNAPVVMI 295
V + WH G + VV +V+G++ LRV+D N A V+M+
Sbjct: 517 VMTIWHYHGGCQVNRVVDAEYRVIGVDALRVIDGSTFNASPGTNPQATVMML 568
>01_07_0251 + 42289617-42291241,42291424-42292156
Length = 785
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 743 TFEIDEFVKSGLVKNVSNFQCLQHFFQLFTTSP 645
TF+ D+F+ S L+ N C++ F+ F +SP
Sbjct: 349 TFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP 381
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 234 TTRKPLIPNTFRXPATTVPIAAGP 163
TTR PL+P+ R P VP AA P
Sbjct: 42 TTRAPLLPSPPRLPPLLVPFAAVP 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,406,672
Number of Sequences: 37544
Number of extensions: 305596
Number of successful extensions: 620
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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