Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F01
         (1195 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    56   5e-08
U40953-5|AAB52648.1|  385|Caenorhabditis elegans G protein, alph...    29   8.6  
AY008128-1|AAG32081.1|  385|Caenorhabditis elegans heterotrimeri...    29   8.6  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 28/49 (57%), Positives = 33/49 (67%)
 Frame = +2

Query: 176 MGTVVAGXLKVLGINGLRVVDAXVMPKIIRGNTNAPVVMIAEIAADLIK 322
           M  V    + V G   L+VVDA VMP I+ GN NAPV+M+AE AADLIK
Sbjct: 534 MAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMAERAADLIK 582


>U40953-5|AAB52648.1|  385|Caenorhabditis elegans G protein, alpha
           subunit protein 5 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 737 EIDEFVKSGLVKNVSNFQCLQHFFQLFTTSPLLQSQYRY 621
           E+DE     ++  VS ++C++ FF+ F   P++     Y
Sbjct: 118 EVDEL---NVINAVSGYECIKQFFERFAFHPMVPDHIHY 153


>AY008128-1|AAG32081.1|  385|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 737 EIDEFVKSGLVKNVSNFQCLQHFFQLFTTSPLLQSQYRY 621
           E+DE     ++  VS ++C++ FF+ F   P++     Y
Sbjct: 118 EVDEL---NVINAVSGYECIKQFFERFAFHPMVPDHIHY 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,917
Number of Sequences: 27780
Number of extensions: 304319
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3276419812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)