Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E23
         (1137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   6.4  
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    26   8.5  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    26   8.5  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +3

Query: 756 VLNLNLISMSMIVDFHFVF--FLS*PLL 833
           +L+ +L  +S ++ FHF+F  FLS PLL
Sbjct: 165 ILSHSLFHISHLISFHFLFFSFLSFPLL 192


>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 341 IQQLXRTLNEKXGNEKQLQXTWKVLTVLKNNNQPII 448
           IQ + R  +EK G+E  L    +VL  LK    P+I
Sbjct: 30  IQTIERFQDEKSGSESVLSQLNRVLMYLKGEEIPLI 65


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 561 IRAYIKVILSTFLDNFFSSEAILAR*SPKCV 469
           ++  +  ILST  ++F+  +AIL+  +P CV
Sbjct: 183 LQPIVHPILSTACNHFYEKDAILSLLNPTCV 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,526
Number of Sequences: 5004
Number of extensions: 46637
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)