Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E18
         (1247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    29   1.3  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   1.8  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   2.4  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    28   2.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    28   3.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.1  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 28/98 (28%), Positives = 45/98 (45%)
 Frame = -1

Query: 989 STNXVCTMWSLVIRPSFLALFIIFVAHTNGIQYLDIGLLPSIFSKTFLSLSNIRPESTTC 810
           STN V   W LV  P  L L    V   N  +  D+     +F  + +  S I P+++  
Sbjct: 182 STNLVKFQWFLVPEPQMLQLVNSVVQICNHARLEDVVTEVLMFFDSMIRYSVI-PKAS-- 238

Query: 809 CHVGNLLFTLRDTLCSVMT*ARMAYLTIFLLINRPVSS 696
             + + +  L  T  S  + +++A   IF LI+ PVS+
Sbjct: 239 --LYDTVLILCSTYISTYSYSKLAQSVIFNLISSPVSN 274


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 357 VRYSHFFV*FKTLLNYFYLDTHVLLAQAWN 268
           +   HF   F+++L Y YLDT+ +  + +N
Sbjct: 206 IEVKHFAKEFESILRYLYLDTNAVFTKQYN 235


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -1

Query: 284 WRKLGMRHTRKIKYVLESNKKFVSRLIFKEGERK 183
           +RK+ + + +K+KY+L+ N + + RL+ KE + K
Sbjct: 193 YRKI-LENGKKVKYLLDENGEILKRLVKKEKKLK 225


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 796 FPTWQH-VVDSGLMLESERKVFEKMDGKSPMSKYWMPLVWATNIINRARKEGLITSD 963
           F  W H +++  L + S+  V  K++    MSKY +     ++IINR ++   + S+
Sbjct: 313 FQRWHHQMMEDKLSMPSKNFVQRKLNDLRDMSKYVLSEKEVSDIINRKKELSRVPSN 369


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 926 IIFVAHTNGIQYLDIGLLPSIFSKTFLSLSNIRPESTTCCH 804
           IIF+   +G  +L   L   ++ +      N+ PEST C +
Sbjct: 159 IIFIILRDGTGFLQCVLSGKVYDRASYDFINLGPESTVCLY 199


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 394 NNQNCCRLVLHRRTI*SFFCLV*NTIKLF 308
           NN NCCR +  RR++     L  N I  F
Sbjct: 112 NNDNCCREIARRRSLSPLLILPLNFINAF 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,406,788
Number of Sequences: 5004
Number of extensions: 89989
Number of successful extensions: 233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)