Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E17
         (1197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    45   2e-05
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    43   1e-04

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +1

Query: 760 GFPQ-GVNPRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWF 936
           G P+ G +    + ++   T  QL  L   F K   P   +RE++  ++N+PE  V +WF
Sbjct: 155 GTPESGGSTSAPKSKKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWF 214

Query: 937 KNRRAKCR 960
           +NRRAK +
Sbjct: 215 QNRRAKSK 222


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = +1

Query: 784 RKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVA--LKINLPESRVQVWFKNRRAKC 957
           +K+RR RTT   A L  LE  F KT  P +  R+E++  LK ++    +Q+WF+N+R   
Sbjct: 33  QKKRRRRTTDAEATL--LEQYFLKTPKPSLIERQELSKKLKSSMTPRELQIWFQNKRQSL 90

Query: 958 R 960
           R
Sbjct: 91  R 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,206
Number of Sequences: 5004
Number of extensions: 44887
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)