Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_E16
(1771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 32 1.6
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 2.0
12_02_1174 - 26696869-26698191 31 2.2
02_05_0686 - 30900748-30902167,30903442-30904742 31 2.9
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 31 2.9
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 31 3.8
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 30 5.0
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 6.6
10_08_0638 - 19503580-19503990 29 8.7
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 8.7
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 8.7
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 29 8.7
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 31.9 bits (69), Expect = 1.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 464 PKXXPXPPKPPPXXGPPXKPRXK 396
PK P PP PPP PP P K
Sbjct: 146 PKAAPPPPPPPPPHAPPGPPPTK 168
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 27.9 bits (59), Expect(2) = 2.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 452 PXPPKPPPXXGPPXK 408
P PP PPP GPP +
Sbjct: 249 PLPPPPPPPPGPPPR 263
Score = 22.2 bits (45), Expect(2) = 2.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 464 PKXXPXPPKPPP 429
P P PP PPP
Sbjct: 200 PSTLPPPPPPPP 211
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.5 bits (68), Expect = 2.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 464 PKXXPXPPKPPPXXGPPXKPRXKXP 390
P P PP PPP PP P K P
Sbjct: 149 PPSLPPPPPPPPPPPPPRPPSVKPP 173
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 2.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 464 PKXXPXPPKPPPXXGPPXKPRXKXP 390
P PP PPP GPP P K P
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGP 362
Score = 29.5 bits (63), Expect = 8.7
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Frame = -1
Query: 484 PPXGKKXPXXXPXPQNPPPXXGPP*NP--GXKXXVPXKGXXXGXXENFPRKFVPLXKXXX 311
PP P P PPP PP P G P KG P P
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Query: 310 XFXPPPXXXXGG 275
PPP GG
Sbjct: 374 KGGPPPPPPKGG 385
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 31.1 bits (67), Expect = 2.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 464 PKXXPXPPKPPPXXGPPXKPRXKXP 390
PK P PP PPP PP P P
Sbjct: 349 PKLMPPPPPPPPPPPPPPPPPPPRP 373
Score = 29.9 bits (64), Expect = 6.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 464 PKXXPXPPKPPPXXGPPXKPRXKXP 390
P P PP PPP PP +P P
Sbjct: 354 PPPPPPPPPPPPPPPPPPRPPPPPP 378
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 30.7 bits (66), Expect = 3.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 452 PXPPKPPPXXGPPXKPRXKXPC 387
P PPKPPP PP +P PC
Sbjct: 184 PEPPKPPPE--PPKEPEPPKPC 203
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 30.3 bits (65), Expect = 5.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 470 KXPKXXPXPPKPPPXXGPPXKPRXKXP 390
K PK P P PP GP KP+ P
Sbjct: 188 KPPKPGPKPKPKPPKPGPKPKPKPPKP 214
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 6.6
Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Frame = -2
Query: 444 PKTPPLXGAPXETPGXXPXFLXRGPKXGPXKI-FQGNLXXXKKXGGFXXPPPXXXXEGGF 268
P PPL P P GP P F+G GG PPP GG
Sbjct: 1136 PPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGV 1195
Query: 267 KG 262
G
Sbjct: 1196 GG 1197
>10_08_0638 - 19503580-19503990
Length = 136
Score = 29.5 bits (63), Expect = 8.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 452 PXPPKPPPXXGPPXKPRXKXPCS 384
P PP PPP PP +P P S
Sbjct: 112 PTPPPPPPRKKPPPQPPPSRPTS 134
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 29.5 bits (63), Expect = 8.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 464 PKXXPXPPKPPPXXGPPXKPRXKXP 390
P+ P PP PPP PP P P
Sbjct: 76 PQTPPSPPPPPPPPPPPPPPLSPTP 100
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.5 bits (63), Expect = 8.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 464 PKXXPXPPKPPPXXGPPXKPRXKXP 390
P P PP PPP PP P P
Sbjct: 427 PPPLPPPPPPPPPPPPPLPPNMPPP 451
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 29.5 bits (63), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 452 PXPPKPPPXXGPPXKPRXKXP 390
P PP+PPP PP +P P
Sbjct: 47 PSPPRPPPPPPPPTQPAPPPP 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,299,434
Number of Sequences: 37544
Number of extensions: 341535
Number of successful extensions: 3857
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3008
length of database: 14,793,348
effective HSP length: 86
effective length of database: 11,564,564
effective search space used: 5816975692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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