Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E13
         (1255 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S80905-1|AAB50686.1|  382|Homo sapiens Con1 protein.                   35   0.71 
M65158-1|AAA96439.1|  625|Homo sapiens type VII collagen protein.      31   8.8  
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.      31   8.8  
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen...    31   8.8  

>S80905-1|AAB50686.1|  382|Homo sapiens Con1 protein.
          Length = 382

 Score = 34.7 bits (76), Expect = 0.71
 Identities = 39/170 (22%), Positives = 48/170 (28%), Gaps = 7/170 (4%)
 Frame = +1

Query: 319 PKXGGGPXFXXKKKKKRXXPPPXGGPXKKXXXXFFXPPXXXKXXSQKXPX-PPLXKXXXX 495
           P+ G  P        K   PPP GG   +        P          P  PP       
Sbjct: 7   PQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 66

Query: 496 XXPXGXXKXXPXXXFXGXKNPPXKXXXXXGGXFLKXXXKKKXPXXXXKX--GNPQXGGXR 669
             P G     P       + PP +      G        +  P        G P  G  +
Sbjct: 67  PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 126

Query: 670 GAPPXXFXXGEKKXXXEKKXXGXXXXPPKKXG----GPXPXXPKXXGXPP 807
           G PP     G+ K    +   G    PP + G    GP P   K  G PP
Sbjct: 127 GPPP----QGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 172


>M65158-1|AAA96439.1|  625|Homo sapiens type VII collagen protein.
          Length = 625

 Score = 31.1 bits (67), Expect = 8.8
 Identities = 23/111 (20%), Positives = 30/111 (27%)
 Frame = +1

Query: 544 GXKNPPXKXXXXXGGXFLKXXXKKKXPXXXXKXGNPQXGGXRGAPPXXFXXGEKKXXXEK 723
           G + PP          F     +   P      G P   G +G+P      G+      +
Sbjct: 470 GPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPR 529

Query: 724 KXXGXXXXPPKKXGGPXPXXPKXXGXPPPKXXXXKXXXXXXXPPXXXXGXP 876
              G    P +  GG  P  P   G P P              P    G P
Sbjct: 530 GPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLP 580


>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
          Length = 2912

 Score = 31.1 bits (67), Expect = 8.8
 Identities = 23/111 (20%), Positives = 30/111 (27%)
 Frame = +1

Query: 544  GXKNPPXKXXXXXGGXFLKXXXKKKXPXXXXKXGNPQXGGXRGAPPXXFXXGEKKXXXEK 723
            G + PP          F     +   P      G P   G +G+P      G+      +
Sbjct: 1284 GPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPR 1343

Query: 724  KXXGXXXXPPKKXGGPXPXXPKXXGXPPPKXXXXKXXXXXXXPPXXXXGXP 876
               G    P +  GG  P  P   G P P              P    G P
Sbjct: 1344 GPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLP 1394


>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
            protein.
          Length = 2944

 Score = 31.1 bits (67), Expect = 8.8
 Identities = 23/111 (20%), Positives = 30/111 (27%)
 Frame = +1

Query: 544  GXKNPPXKXXXXXGGXFLKXXXKKKXPXXXXKXGNPQXGGXRGAPPXXFXXGEKKXXXEK 723
            G + PP          F     +   P      G P   G +G+P      G+      +
Sbjct: 1284 GPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPR 1343

Query: 724  KXXGXXXXPPKKXGGPXPXXPKXXGXPPPKXXXXKXXXXXXXPPXXXXGXP 876
               G    P +  GG  P  P   G P P              P    G P
Sbjct: 1344 GPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLP 1394


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.307    0.146    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,738,272
Number of Sequences: 237096
Number of extensions: 2267477
Number of successful extensions: 2457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2089
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17890024750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)