Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E12
         (1248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...   195   9e-51
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   5.4  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   5.4  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score =  195 bits (476), Expect = 9e-51
 Identities = 100/206 (48%), Positives = 139/206 (67%), Gaps = 12/206 (5%)
 Frame = +3

Query: 315 MRTVAXISGGKDSCYNMLQCVGAGHTIVALANLQP-----------LHKVGHHGIELYAE 461
           M+ +  ISGGKDSC+N++ CV  GH +VALANL P              VGH  I LYAE
Sbjct: 1   MKVLGLISGGKDSCFNLMHCVSLGHEVVALANLHPEDGKDEIDSFMYQSVGHDVIPLYAE 60

Query: 462 AMGLPLYREIITGTAVDQGKNXKPTDNDEVEDLYRLLSKV-KEEINIEAVAVGAILSDYQ 638
              LPLYRE I G +++Q  + + T+ DE EDLYRL+ +V     ++EAV+ GAILS YQ
Sbjct: 61  CFDLPLYREKIGGQSINQNLDYQFTEKDETEDLYRLIKRVLTNHPDLEAVSTGAILSTYQ 120

Query: 639 RIRVENVCQRLGLVSLAYLWRRNQKELLQEMIYCGIDAIIIKVAAMGLDPRIHLGMTIRD 818
           R RVENVC+RLGL SL++LW+++Q++LL +M+  G++AI+IKVAA+GL  R  LG ++ +
Sbjct: 121 RTRVENVCKRLGLKSLSFLWQKDQEKLLNDMVVSGLNAILIKVAAIGL-TRKDLGKSLAE 179

Query: 819 IQPHLLVMKEKYGLNMCGXGGRVXNL 896
           +Q  LL + +K+ L+ CG GG    L
Sbjct: 180 MQDKLLTLNKKFELHPCGEGGEYETL 205



 Score = 32.7 bits (71), Expect = 0.11
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 871 GXGGEYXTFTLXCPLXXKKLIIDXK 945
           G GGEY T  L CPL  K++++  K
Sbjct: 197 GEGGEYETLVLDCPLFKKRIVLTDK 221


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 450 LYAEAMGLPLYREIITGTAVDQGKNXKPTDNDEVEDLYRLLSKV-KEEINIEAVAVGAIL 626
           L AE   +  + E+ +G  ++     K     +   L++L ++  K+E N  A+++  +L
Sbjct: 175 LDAEKRAIQRFSELFSGLGLEDRIEGKKVAKVDASGLWKLYTRDGKQEPNATAISLADML 234

Query: 627 SDYQRI 644
           +D+Q +
Sbjct: 235 ADFQNV 240


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 534 TDNDEVEDLYRLLSKVKEEINIEAVAVGAILSDYQ 638
           ++ D+  D +++  ++ EE+    + VG  L DYQ
Sbjct: 839 SEEDKNLDYFKVAHRIHEEVEQPKIFVGGTLKDYQ 873


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 EFFQKKGTGLVRTLCNYILKTKLYIS 310
           +F   +G  ++R LCNYI   ++Y S
Sbjct: 529 KFLNSRGNLIIRQLCNYIEGERVYTS 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,641,325
Number of Sequences: 5004
Number of extensions: 67603
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)