Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E12
         (1248 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-6|AAK85462.3|  249|Caenorhabditis elegans Hypothetical ...   195   6e-50

>AC006627-6|AAK85462.3|  249|Caenorhabditis elegans Hypothetical
           protein E01A2.5 protein.
          Length = 249

 Score =  195 bits (475), Expect = 6e-50
 Identities = 102/203 (50%), Positives = 135/203 (66%), Gaps = 14/203 (6%)
 Frame = +3

Query: 315 MRTVAXISGGKDSCYNMLQCVGAGHTIVALANLQP-------------LHKVGHHGIELY 455
           M+ V  ISGGKDSCYN++  V  GH IVALANL P                VG  G+ELY
Sbjct: 1   MQVVGLISGGKDSCYNLMCAVREGHQIVALANLHPPKDAKSDELDSYMYQSVGADGVELY 60

Query: 456 AEAMGLPLYREIITGTAVDQGKNXKPTDNDEVEDLYRLLSKVKEEI-NIEAVAVGAILSD 632
            EAM LPLYR  ITG   +Q  + + TD DEVEDL+ LL +VK+    ++ V+ GAILS 
Sbjct: 61  GEAMQLPLYRREITGEPKNQKSDYEKTDGDEVEDLFELLCEVKKHHPEVKGVSAGAILSS 120

Query: 633 YQRIRVENVCQRLGLVSLAYLWRRNQKELLQEMIYCGIDAIIIKVAAMGLDPRIHLGMTI 812
           YQ++RVE++C+RL LV L +LW R Q  LL EM+  G+DAI+IKVAA+GL  + HLG T+
Sbjct: 121 YQKVRVEDICRRLDLVPLCFLWEREQNGLLAEMVENGLDAILIKVAAIGLGEQ-HLGKTL 179

Query: 813 RDIQPHLLVMKEKYGLNMCGXGG 881
            ++ P + V+++KYG++ CG GG
Sbjct: 180 SEMAPIMKVLQDKYGVHPCGEGG 202



 Score = 31.5 bits (68), Expect = 1.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 871 GXGGEYXTFTLXCPLXXKKLIID 939
           G GGE+ +F   CPL  K+++ID
Sbjct: 199 GEGGEFESFVRDCPLFKKRIVID 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,335,274
Number of Sequences: 27780
Number of extensions: 389561
Number of successful extensions: 867
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3464240056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)