Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E11
         (1176 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   9.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   9.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +1

Query: 196 DEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVERYAHYYNMNHNNR 360
           ++ K+N     + ++NGN   G+    +  +  R+      +R  +  N N NN+
Sbjct: 476 NDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDN---KRNGNRQNDNQNNQ 527


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +1

Query: 193 ADEEKKNNGSGTEQRKNGNEDEGDAWG-SHGSSQGRRYAKMPVERYAHY 336
           A     NN +      NG  D G+  G S+ ++ G  +    +  Y H+
Sbjct: 237 ASNNNNNN-NNNNNNNNGANDNGNGNGASNNNNNGDMFCHTGLGHYGHH 284


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 196 DEEKKNNGSGTEQRKNGNEDE 258
           D  +KNN      +KN N+++
Sbjct: 431 DNNQKNNKKNANNQKNNNQND 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,971
Number of Sequences: 438
Number of extensions: 6479
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40006332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)