Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_E09
(1186 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 136 2e-32
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 133 3e-31
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 117 2e-26
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 32 1.0
02_05_0461 - 29242711-29242864,29242992-29243059,29243500-292435... 29 7.1
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 29 9.4
09_02_0001 - 2857651-2857923,2858089-2858283 29 9.4
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 136 bits (330), Expect = 2e-32
Identities = 70/174 (40%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Frame = +3
Query: 186 LQNQWSLWF---YANXRNKTWXEHLIELTXFDTVEAFWXLYHHIKLPSELRQGHDYAVFK 356
L++ W+ WF + TW + + F TVE FW LY++I PS+L G D+ FK
Sbjct: 54 LEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFK 113
Query: 357 QGIRPMWEXDANKXGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVVNV 536
I P WE GG+W S + + D WL +L +IGE F+ DEICGAVV+V
Sbjct: 114 NKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQFDYGDEICGAVVSV 169
Query: 537 RPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 698
R K ++IAIWT +A + A I IGK+ KE L IGF VH D + K+ ++
Sbjct: 170 RGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSKYEDMSE 223
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 133 bits (321), Expect = 3e-31
Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Frame = +3
Query: 183 RLQNQWSLWFYANXRNK---TWXEHLIELTXFDTVEAFWXLYHHIKLPSELRQGHDYAVF 353
+L QW+ W+ + K W L + FDTVE FW LY I PS++ D+ +F
Sbjct: 31 KLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLF 90
Query: 354 KQGIRPMWEXDANKXGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVVN 533
K G+ P WE GG+W + +K T L+ WL+ ++ LIGE F+ S+EICG V +
Sbjct: 91 KAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQFDESEEICGVVAS 147
Query: 534 VRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRD 668
VR + DK+A+WT A + + IGKK KE + + K+ + H D
Sbjct: 148 VRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDD 192
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 117 bits (282), Expect = 2e-26
Identities = 56/178 (31%), Positives = 102/178 (57%), Gaps = 4/178 (2%)
Frame = +3
Query: 186 LQNQWSLWFYANX---RNKTWXEHLIELTXFDTVEAFWXLYHHIKLPSELRQGHDYAVFK 356
L+ ++ LW+ R++++ +++ ++ F TVE+FW Y H+ P L D +FK
Sbjct: 51 LRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHLFK 110
Query: 357 QGIRPMWEXDANKXGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVVNV 536
+GIRP+WE AN+ GG+W+I +K T RFW D+VL+L+G+ + SD++CG V++V
Sbjct: 111 EGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVCGVVLSV 166
Query: 537 RPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI-HGKIGFQVHRDTMVKHSSATKNLY 707
R D +++W +A A + + +K L + H + D ++ +S+ +N +
Sbjct: 167 RFNEDILSVWNRNASDHQAVMTLRDSIKRHLKLPHSYLMEYKPHDASLRDNSSYRNTW 224
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 31.9 bits (69), Expect = 1.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 552 KIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 698
++A WT A+K + G L G+ VHR VKH +A+K
Sbjct: 180 RVAFWTHQALKPLKQADKGSGLYAVYGLCKSYSISVHRPFHVKHPNASK 228
>02_05_0461 -
29242711-29242864,29242992-29243059,29243500-29243589,
29244026-29244733
Length = 339
Score = 29.1 bits (62), Expect = 7.1
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Frame = +3
Query: 414 ISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV-NVRPKV----DKIAIWTADA 578
IS+ KK F D RF+ D + + E + + G + N+ K+ KI + +
Sbjct: 218 ISMYKKMWFPD--RFYKDYLKAMFNNRKERMELLQGLITSNMDAKIPTFQQKIMLIWGEE 275
Query: 579 MKQHATIEIGKKLKEQLG----IHG--KIGFQVH 662
K IE+ KK+KEQLG +HG K G +H
Sbjct: 276 DKIF-DIELAKKMKEQLGDGCFLHGIPKAGHLLH 308
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 28.7 bits (61), Expect = 9.4
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 871 SVKYNFILLL*LRKFSLWDVLNIFYSIKLNYF 776
+V +N IL+ LR FSL +L +F + LNYF
Sbjct: 84 AVVFNRILVFSLRIFSLAAILCVFGILPLNYF 115
>09_02_0001 - 2857651-2857923,2858089-2858283
Length = 155
Score = 28.7 bits (61), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 234 TWXEHLIELTXFDTVEAFWXLYHH 305
TW HL LT + +E ++ L HH
Sbjct: 129 TWLWHLYTLTPYSNMEKYYTLLHH 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,152,140
Number of Sequences: 37544
Number of extensions: 403314
Number of successful extensions: 751
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3608292120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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