Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E07
         (1176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    29   1.3  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    27   6.7  

>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 44  SQLCQIMAILQTSNYVSLCGRNRQVDGTYLCRFTSTN---LISYKICSNLQTHFKQ*LCR 214
           +++C+I      S Y   CG   + DG Y+C +   N      Y + S++QTH      R
Sbjct: 420 TRICRIPPETMASLY---CGP--EADGKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYR 474

Query: 215 VQLCR 229
             LC+
Sbjct: 475 CDLCK 479


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +1

Query: 898  SLLSPAPVASLRPPMKYARNATQ----LKL*PWKTQRXSATXTIXARMHRRTETRGEKLR 1065
            S+L   PV S +PP+KY  N+ +         W   R +   T  +R+ +   T G    
Sbjct: 333  SVLEAIPVLSTKPPVKYFDNSLENLGNYNSFIWYGPRWAQAATAPSRLSKGFITEGGIRC 392

Query: 1066 RCLMQYXP 1089
              +++Y P
Sbjct: 393  PAIIRYPP 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,248,089
Number of Sequences: 5004
Number of extensions: 84275
Number of successful extensions: 191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)