Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E07
         (1176 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormo...    30   2.8  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    30   3.6  

>AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 76 protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 693 NDLLCATPPIALAQKDPSHSCASTEEQTKCVGCSQPS 803
           N  +  +PP A++    + SC+S  E+ +C  C  P+
Sbjct: 49  NAYMKPSPPSAISSPPSTSSCSSASEKKECAVCKNPN 85


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 753 CASTEEQTKCVG--CSQPSCLYGQCDGHLPSTSTDKKDCSC 869
           CAST +   CVG  C+   CLYG   G           C+C
Sbjct: 353 CASTNQTVACVGNPCTSEPCLYG---GTCSDLGNGSYSCAC 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,788,644
Number of Sequences: 27780
Number of extensions: 498671
Number of successful extensions: 1041
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3213813064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)