Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_E06
(1187 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 61 3e-10
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 40 5e-04
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 39 0.002
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 35 0.025
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.14
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 31 0.41
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 31 0.41
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 30 0.55
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 30 0.72
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.96
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 29 1.3
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 29 1.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 2.2
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 28 2.9
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 3.9
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 3.9
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 5.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 5.1
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 6.8
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 27 6.8
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 6.8
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 8.9
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 61.3 bits (142), Expect = 3e-10
Identities = 52/222 (23%), Positives = 109/222 (49%), Gaps = 17/222 (7%)
Frame = +1
Query: 247 ELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDRRLD 426
E +++ +A+ Q + ++Q ++ S+ ++ + ++EQ+G+AT L Q E++ ++ LD
Sbjct: 190 EEDQEVEAIKQKIQFVKQDSLSSTRNALLMAGNAEQMGLATLANLGEQTEKIATAEKELD 249
Query: 427 EINTNLNYSQKHLNGIK----SVF-------YGLKNYISGKSDQTPSKSPATS-----NV 558
+ +++ +K S+F +G ++ + + +K A N
Sbjct: 250 ISKIHAKRAEEQARELKTLNRSMFAIHVPKPWGKAKRVAAEEARLAAKRDAERQDEMLNR 309
Query: 559 RNAGTSSSRLDETL-DNMSRNVEDRFESHPSARLHGLSQESAKSPETENERVNNILDSNL 735
+ A S R+D+ + DNM N + + +S + L + P+ E++ + +D NL
Sbjct: 310 QFAYRSQKRIDQAMKDNMKSN-KKKGDSKGVSILERSHYQF--EPDAEDDAMEKEIDGNL 366
Query: 736 DEMVHAISRLKHLGVALGEEIEQQNNLVDTIQDKVEIADIKI 861
D++ +RLK L A G+EI+ QN + +I DK + D +
Sbjct: 367 DQIGALATRLKGLAYATGQEIDSQNARLGSIHDKSDRLDTDV 408
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 40.3 bits (90), Expect = 5e-04
Identities = 43/217 (19%), Positives = 90/217 (41%), Gaps = 2/217 (0%)
Frame = +1
Query: 274 IQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYS 453
I+ +R++E+ + L+D Q EE SR + Q + R+ E L
Sbjct: 15 IRDRRKLEEFGQNPDEEIESSLKDVRQELQKLNEEQSRLEKNAQIPEYRVRESEAFLIRM 74
Query: 454 QKHLNGIKSVFYGLKNYISGKSDQTP--SKSPATSNVRNAGTSSSRLDETLDNMSRNVED 627
Q+ L + F + S +D T S +P ++ N T L +T + S +
Sbjct: 75 QRRLESAEEEFEKQRRASSIPADGTSAFSANPQVASTNNKLTPLPSLQKTTSS-SEGSDI 133
Query: 628 RFESHPSARLHGLSQESAKSPETENERVNNILDSNLDEMVHAISRLKHLGVALGEEIEQQ 807
E+ + + ++++ N + +L + ++ R K +G A+ E+ +Q
Sbjct: 134 EMEAMYPVDGNDPDPINVNVLAQMHQQMLNEQEESLGGIEASVQRQKRMGYAMNTELSEQ 193
Query: 808 NNLVDTIQDKVEIADIKIGKQNKQMNKLLGK*QYYSK 918
N L+D + + + + + ++NK+ K + Y +
Sbjct: 194 NVLLDNMNNDADRIERRFDHAKNRLNKVSRKAKQYPR 230
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/74 (27%), Positives = 38/74 (51%)
Frame = +1
Query: 661 GLSQESAKSPETENERVNNILDSNLDEMVHAISRLKHLGVALGEEIEQQNNLVDTIQDKV 840
GLS+E E++ D LD + I ++ +GEE+ QQ +L+DT+ + +
Sbjct: 119 GLSEEDHAVNRQYQEQLYQQQDVMLDGVYDTIGNIRGQAALMGEELGQQADLLDTLDNSI 178
Query: 841 EIADIKIGKQNKQM 882
E + K+ + K++
Sbjct: 179 ETTNSKLRRGMKRL 192
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 34.7 bits (76), Expect = 0.025
Identities = 36/185 (19%), Positives = 75/185 (40%), Gaps = 7/185 (3%)
Frame = +1
Query: 289 EIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLN 468
E+++ + S + RD ++ +++ ++ +LDE L S+ N
Sbjct: 762 ELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEKEFNQYKHKLDEFTPILEKSENDYN 821
Query: 469 GIKSVFYGLKNYISGKSDQTPSKSPATSNVRNAGTSSSRLDETLDNMSRNVEDRFE--SH 642
G+K L+ + TS ++ T + L+ +L N N + E
Sbjct: 822 GVKLECEQLEGELQNHQQSLVQGESTTSLIK---TEIAELELSLVNEEHNRKKLTELIEI 878
Query: 643 PSARLHGLSQE---SAKSPETENERVNN--ILDSNLDEMVHAISRLKHLGVALGEEIEQQ 807
SA+ GL++E + S +T +NN + L+ + R K + + +E++
Sbjct: 879 ESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKLNHEFDRLEREKSVAITAINHLEKE 938
Query: 808 NNLVD 822
N+ +D
Sbjct: 939 NDWID 943
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 32.3 bits (70), Expect = 0.14
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Frame = +1
Query: 238 HIAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDR 417
+I EL++Q Q ++ E+ R + D +I E L + E + +
Sbjct: 562 NIRELQQQNQNLLSAVHELADRMEKDEKPDL----DGAEI---QEETLIKANETIDQLTK 614
Query: 418 RLDEINTNLNYSQKHLNGIKSVFYGLKNYISGKSDQTPSKSPATSNVRNAGTSSS--RLD 591
L+E++ L YS K + +S+ + + + TP+ T+ + S RL+
Sbjct: 615 MLEEVSDQLRYSLKERDFFRSLVQENEKLLD-MAPATPNSKLNTNLIEQTSYQRSLIRLE 673
Query: 592 ------ETLDNMSRNVEDRFE 636
E+L ++SRN E +FE
Sbjct: 674 QLTNELESLKSISRNKEKKFE 694
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 30.7 bits (66), Expect = 0.41
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +1
Query: 529 PSKSPATSNVRNAGTSSSRLDETLDNMSRNVEDRFESHPS-ARLHGLSQES-AKSPETEN 702
PS SP+T+NV NA TSS+ ++ R + R ES S + +H S S + +TE
Sbjct: 214 PSSSPSTTNVSNASTSSAPIN------PRAPQTRRESISSTSSIHYCSSSSLSYLHDTER 267
Query: 703 ERVNNILDS 729
V ++ DS
Sbjct: 268 ALVGSLTDS 276
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.41
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 235 GHIAELERQRQAMIQTQREIEQRTIDSSTRSI-GLLRDSEQIGIATAEELSRQREQLQNT 411
G A ++ A++++Q + + SS ++I + + I A+ +S QRE +Q
Sbjct: 200 GDGANTRYEQMALLESQTDTYSQQRMSSIQNIESTITELGGIFSQLAQMVSEQRETVQRI 259
Query: 412 DRRLDEINTNLNYSQKHL 465
D D+I +N+ +Q+ +
Sbjct: 260 DMHTDDIVSNIGSAQREI 277
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 30.3 bits (65), Expect = 0.55
Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 11/153 (7%)
Frame = +1
Query: 334 LLRDSE--QIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVFYGLKN-- 501
L+ SE QI + ++ SR+R+ L+ + ++E NL Y+ K + K +
Sbjct: 183 LINSSELAQIDLELSKLYSRRRQVLERLSK-IEE--QNLKYTSKLASVEKLMLDSDAQDL 239
Query: 502 YISGKSDQTPSKSPATSNVRNAGTSSSRLDETLDNMSRNVEDRFESHPSARLHGLS---- 669
Y S D PS+ A N N D+ DN+S PS +S
Sbjct: 240 YSSYSHDLIPSQIEAGKNGANPDVFDDTHDKYTDNLSARAISPRAPRPSTASEVVSDYFE 299
Query: 670 QESA--KSPETENERVN-NILDSNLDEMVHAIS 759
Q SA K+PE VN N + NL + A S
Sbjct: 300 QNSAFSKAPENTESSVNQNYIVGNLVKQFQAHS 332
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 29.9 bits (64), Expect = 0.72
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 337 LRDSEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVF-YGLKNYISG 513
+RDS+ I+ ELS+ E++ + R D++N N S+ ++ V Y L S
Sbjct: 267 VRDSDWELISLRNELSKLDEKILSLQRETDDVNIAQNKSKLIQRDLQKVLDYKLGILQSL 326
Query: 514 KSDQTPSKSPATSNVRNAGTSSSRLDETLDNMSRNVEDR 630
K+D P+ S + N L++ L+ + R++E R
Sbjct: 327 KND--GPNGPSASAIDN---DLKMLEQQLNVLGRHLEGR 360
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.5 bits (63), Expect = 0.96
Identities = 29/156 (18%), Positives = 68/156 (43%)
Frame = +1
Query: 247 ELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDRRLD 426
+LE Q Q +++E + + +L S +T+ + SR + +L + + ++
Sbjct: 1276 QLESQLQTEKAAVKKLENSNEEYKRHNQEILL-SLNSSTSTSSDASRLKNELVSKENLIE 1334
Query: 427 EINTNLNYSQKHLNGIKSVFYGLKNYISGKSDQTPSKSPATSNVRNAGTSSSRLDETLDN 606
E+N + + + L +KS L+N +Q+ + N + A ++ ++ + N
Sbjct: 1335 ELNQEIGHLKSELETVKSKSEDLEN--ERAQNQSKIEQLELKNTKLAAAWRTKYEQVV-N 1391
Query: 607 MSRNVEDRFESHPSARLHGLSQESAKSPETENERVN 714
S ++ S + L + A+ + NE++N
Sbjct: 1392 KSLEKHNQIRQQLSQKTSELEAKVAECHQL-NEQLN 1426
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 29.1 bits (62), Expect = 1.3
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 244 AELERQRQAMIQTQREIE--QRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDR 417
AE+ERQR A Q Q+ +E Q R +Q + T +L+ +QL T
Sbjct: 367 AEMERQRMAAQQHQQALEAIQMAQAEQQRIAQEQLAQQQFQMQTQGQLAELEQQLLATRG 426
Query: 418 RLDEINTNLN 447
+L++ N LN
Sbjct: 427 QLEQSNVLLN 436
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 532 SKSPATSNVRNAGTSSSRLDETLDNMSRNVEDRFESHPSARLHGLS 669
S+SP V+ GT+ ++ +ET N +D FE P H +S
Sbjct: 129 SESPIPQQVKRDGTTDAKNEET-TKPENNEKDDFEEEPPLPKHKIS 173
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.3 bits (60), Expect = 2.2
Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Frame = +1
Query: 325 SIGLLRDSEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVFYGLKNY 504
+IG L+DS EE+ +E + +L + + L+ ++ +K +N
Sbjct: 355 TIGSLKDSRTSNSQLEEEMVELKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNN 414
Query: 505 ISGKSDQTPSKS----PATSNVRNAGTSSSRLDETLDNMSRNVED--RFESHPSARLHGL 666
+S K S A S++ +A + ++ D ++ ++D + E A L+
Sbjct: 415 LSSKDKMVKQVSSQLEEARSSLAHATGKLAEINSERDFQNKKIKDFEKIEQDLRACLNSS 474
Query: 667 SQE-SAKSP--ETENERVNNI 720
S E KS + +++ +NN+
Sbjct: 475 SNELKEKSALIDKKDQELNNL 495
Score = 28.3 bits (60), Expect = 2.2
Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)
Frame = +1
Query: 319 TRSIGLLRDSEQIGIATAEELSRQREQLQ----NTDRRLDEINTNLNYSQKHLNGIKSVF 486
T +I L + ++ ELS + E Q +LD +N + + L +S+
Sbjct: 1361 TENIHSLEEGKEETKKEIAELSSRLEDNQLATNKLKNQLDHLNQEIRLKEDVLKEKESLI 1420
Query: 487 YGLKNYISGKSDQTPSKSPATSNVRNAGTSSSR----LDETLDNMSRNVEDRFESHPSA- 651
L+ +S + + S A + + + +SR L E +++++ +++D+ SA
Sbjct: 1421 ISLEESLSNQRQKESSLLDAKNELEHMLDDTSRKNSSLMEKIESINSSLDDKSFELASAV 1480
Query: 652 -------RLHGLS---QESAKSPETENERVNNILDSNLDEMVHAISRLKH---------- 771
+LH S E+ KS E + + +S + E+ H I+ K+
Sbjct: 1481 EKLGALQKLHSESLSLMENIKSQLQEAKEKIQVDESTIQELDHEITASKNNYEGKLNDKD 1540
Query: 772 -LGVALGEEIEQQNNLVDTIQDKVEIADIKIGKQNKQMNKLLGK*QYY 912
+ L E IEQ NNL+ + V+ + + Q N L +Y+
Sbjct: 1541 SIIRDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLADLEYH 1588
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 247 ELER-QRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDRRL 423
ELER Q Q M+Q Q E EQR I+ L ++ Q A A + +Q+ L++ D ++
Sbjct: 78 ELERLQHQKMLQIQAE-EQRKIELQQEQERLEQERRQKEEAIALQKQQQQRLLRSKDPKV 136
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 289 EIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQ----REQLQNTDRRLDE 429
E + ++ T+ + L D+E I AE+LSR+ E+L+ D+ L E
Sbjct: 54 ESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRE 104
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.5 bits (58), Expect = 3.9
Identities = 35/181 (19%), Positives = 85/181 (46%), Gaps = 9/181 (4%)
Frame = +1
Query: 241 IAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGI---ATAEELSRQREQLQNT 411
I+E E + ++ I D + R I LL++ +Q + + + + ++E+ +
Sbjct: 337 ISEKENELSEILPKYNAIVSEADDLNKR-IMLLKNQKQSLLDKQSRTSQFTTKKERDEWI 395
Query: 412 DRRLDEINTNLNYSQKHLNGIKSVFYGLKNYISGKSDQTPSKSPATSNVRNAGTSSSRL- 588
+L +IN N+N ++++ + +K+ + ++N + K + K ++ + G S+L
Sbjct: 396 RNQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSR---KKEIEISLESQGDRMSQLL 452
Query: 589 --DETLDNMSRNVEDRFES--HPSARLHGLSQESAKSPETENER-VNNILDSNLDEMVHA 753
+++ N+ D+ +S A+L S E+ K + +E+ + +D N + A
Sbjct: 453 ANITSINERKENLTDKRKSLWREEAKLKS-SIENVKDDLSRSEKALGTTMDRNTSNGIRA 511
Query: 754 I 756
+
Sbjct: 512 V 512
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 217 ANKPYGGHIAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDS 348
AN+ HI ELE + + + + R + QR +T+ I LLR++
Sbjct: 358 ANEKDAAHITELETKLKELHEQNRRL-QRQKSLATQEIDLLREN 400
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 206 KHSKQISLMEVILQNWNVNAKL 271
K+SKQI ++E +QNW +A+L
Sbjct: 636 KNSKQIQVVERKIQNWRKSAQL 657
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 592 ETLDNMSRNVEDRFESHPSARLHGLSQESAKSPETENERVNNILD 726
+ LDN+S VE + S S+ L GLS + + + ++ N ++
Sbjct: 54 DALDNVSALVEGKVSSKLSSLLEGLSDSKSSTLVVADPKLGNAIN 98
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 26.6 bits (56), Expect = 6.8
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +1
Query: 448 YSQKHLNGIKS----VFYGLKNYISGKS-DQTPSKSPATSNVRNAGTSSSRLDETLDNMS 612
+S N +KS +F K Y + S D TPSK P +++ + T+ D+M
Sbjct: 347 FSASEPNTVKSTNRLIFSERKAYAADDSIDNTPSKVPIVNSLSDPRTNRPFFYSNPDSMY 406
Query: 613 RNVEDRFESHPSARLHGLSQES 678
R++ + S L L++++
Sbjct: 407 RSISNPLHLVDSQHLSPLNRKT 428
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 6.8
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 208 TQQANK--PYGGHIAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEEL 381
T+Q N+ P + ELER+ ++ ++ + D +++ RD+E++ + EL
Sbjct: 1237 TKQVNELSPKASKVPELERKITNLMHEYSQLGKTFEDEKRKALIASRDNEELR-SLKSEL 1295
Query: 382 SRQREQLQNTDRRLDEINT 438
+R+ + L+E+ T
Sbjct: 1296 ESKRKLEVEYQKVLEEVKT 1314
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 574 SSSRLDETLDNMSRNVEDRFESHPSARLHGLSQESAKSPETENERVNNI 720
SSSR L+ S ++ R E Q+ AKSP ++ VN I
Sbjct: 728 SSSRELSNLNERSITIDPRAEEQAQGLEQEQGQDEAKSPAEQSSSVNLI 776
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,235,223
Number of Sequences: 5004
Number of extensions: 85865
Number of successful extensions: 304
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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