Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_E05
(1220 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.25
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.25
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 3.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 7.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/68 (25%), Positives = 19/68 (27%)
Frame = +1
Query: 757 KXPPPPPXXPXPXXXXXXXXXXXRGXGXXXXXPPXGNXXXGGGXPPPXGGXXKXPPPXPX 936
K PPPP P PP G P P G PPP P
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Query: 937 XGXXXGKK 960
G++
Sbjct: 368 SAPSTGRQ 375
Score = 29.5 bits (63), Expect = 0.99
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 437 PPXGXGGXXXGAPPPPPPXK 496
PP G G PPPPPP +
Sbjct: 325 PPIGNGSSNSSLPPPPPPPR 344
Score = 26.6 bits (56), Expect = 7.0
Identities = 20/79 (25%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Frame = +1
Query: 721 PPXKKKXXGXPP--------KXPPPPPXXPXPXXXXXXXXXXXRGXGXXXXXPPXGNXXX 876
PP ++ G PP PPPPP P +G PP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPP--PPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 877 GGGXPPPXGGXXKXPPPXP 933
G PP PP P
Sbjct: 373 GRQPPPLSSSRAVSNPPAP 391
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.25
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 435 PPPXGXGGXXXGPPPPPP 488
PPP G G PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782
Score = 30.3 bits (65), Expect = 0.57
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +2
Query: 764 PPXPPXXXXPXKKKKX---PPXXPGXXGXXXXXPPXGIXPXGXGPPP 895
PP PP P PP P G PP G+ G PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 434 PPPXGXGGXXXGAPPPPPP 490
PPP G PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 434 PPPXGXGGXXXGAPPPPPPXKXXXPXXXGGGGXXPP 541
P P G PPPPPP P G G PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPP-----PPGVAGAGPPPP 778
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -3
Query: 576 PLXXGXPXPPXXGGXXPPPPXXXGXXXFXGGGGGGAPXXXPPXPXGGG 433
P P P G PPPP G G G P PP GG
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPG----VAGAGPPPPPPPPPAVSAGG 789
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 585 GXPPLXXGXPXPPXXGGXXPPPPXXXGXXXFXGGGGGGAP 466
G PP P PP G PPPP GG AP
Sbjct: 760 GPPP----PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/35 (31%), Positives = 13/35 (37%)
Frame = +3
Query: 711 GGXPPXXKKKXXXPPQKXPPXPPXSXPPXKKKNXP 815
G PP PP + PP PP +K P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 434 PPPXGXGGXXXGAPPPPPP 490
PPP G PPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 435 PPPXGXGGXXXGPPPPPP 488
PPP G PPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = +2
Query: 713 GXXPXXKKKXXXXPPKXPPXPPXXXXPXKKKKXPPXXPG 829
G P PP PP PP K+K P G
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 499 GFXXGGGGGGPXXXPPXPXGGGXF 428
G GG GGG PP P G G F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGF 210
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 715 GXPPXKKKXXGXPPKXPPPPPXXPXP 792
G PP K G PP PPP P P
Sbjct: 1177 GIPPVPKPAAGVPP-VPPPSEAPPVP 1201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,526
Number of Sequences: 5004
Number of extensions: 31993
Number of successful extensions: 294
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -