Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E03
         (1164 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...   282   8e-77
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    31   0.31 
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    30   0.53 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   0.93 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    29   1.6  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    29   1.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.8  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.0  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   6.6  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   8.7  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score =  282 bits (691), Expect = 8e-77
 Identities = 130/248 (52%), Positives = 177/248 (71%)
 Frame = +2

Query: 251 LLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQNQET 430
           +L F+++LD+ LLD +V   Y  VG +Q+ AQ +LT  + HPDAW++  +ILE S+  +T
Sbjct: 4   ILAFDRELDVALLDRVVQTFYQGVGAEQQQAQQVLTQFQAHPDAWSQAYSILEKSEYPQT 63

Query: 431 KYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILI 610
           KY AL +L+++I TRWK+LP+ Q  GI+ YIV ++IKNSSD   ++  K +L KL++ L+
Sbjct: 64  KYIALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETVLQQQKTFLNKLDLTLV 123

Query: 611 QVLKREWPHNWETFISDIVGASKTNESLCQNNMEIFKLLSEEVFMFSTGQLTQTKAKHLK 790
           Q+LK+EWPHNW  FI +IV ASKTN SLC+NNM + +LLSEE+F +S  Q+TQ K K+LK
Sbjct: 124 QILKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLLSEEIFDYSAEQMTQLKTKNLK 183

Query: 791 DTMCSEFSQIFQLCQFVLENSQNAPLVGVTLDTLLRFLNWIPLGLYXRNEIDKHIDI*VL 970
           + MC EF++IFQLC  +LE +Q   L+  TL TLLRFLNWIPLG      I + I    L
Sbjct: 184 NQMCGEFAEIFQLCSQILERAQKPSLIKATLGTLLRFLNWIPLGYIFETNIVELITNRFL 243

Query: 971 NVPMFRNV 994
           NVP FRNV
Sbjct: 244 NVPDFRNV 251


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 13/71 (18%), Positives = 35/71 (49%)
 Frame = +2

Query: 431 KYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILI 610
           ++++L + E  +   WK     + E +  ++  + +++++    + S      KL  + I
Sbjct: 70  QHFSLSLFETSVGMNWKSFSNKEKESVTSFLCKISLEDNN----LLSVHFVRSKLASVFI 125

Query: 611 QVLKREWPHNW 643
           ++ KR+W + W
Sbjct: 126 EIAKRDWYNTW 136


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 839 VLENSQNAPLVGVTLDTLLRFLNWIPLG 922
           V E+S  +PL  + +D + R ++W+P+G
Sbjct: 637 VFEDSYKSPLSVIVVDEIERIIDWVPIG 664


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 147  MWINQNNFDFG--KKGTN*LNKYILPEW 224
            M+IN N FDFG  +K +  +N  ILP W
Sbjct: 2081 MFINGNGFDFGSRQKESTPINDVILPPW 2108


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 374 DVPSKQSVYPEQHVVDPQQQN 312
           DV +K S + E+H++DP+++N
Sbjct: 603 DVNTKDSSFAERHIIDPEKRN 623


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 740 ILLHSTT*IFPYCFDRDFHSSLRHPQCH**KFPN 639
           ++L+ TT + P+  DR+ H  + HP+ +   FP+
Sbjct: 252 LILNETTFVEPFSIDRESHRVITHPRVYPKIFPH 285


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
 Frame = +2

Query: 350  ILTALKEHPDAWTR--VDTILEYSQNQETKYYALQILEQVILTRWKILPRNQCEGIKKYI 523
            + T L+ + D + R     I++  Q +  +  ++++L Q++L   +       E   K  
Sbjct: 1069 LFTPLETNSDFFIRELCGNIIDLKQPKRREI-SIEVLYQILLQNHEF-----SESCYKRH 1122

Query: 524  VGLIIKNSSDPVTMESNKVYLKKLNMILIQVLKREWPHNWETFISDIVGASKTNESLCQN 703
               +I  S D  T   NK+ LK +  I +   K    H+W   +  +VG   T+ S   N
Sbjct: 1123 FDRLIWQSLD--TTPDNKL-LKNILYIWLNDYKDSDIHSWVNILLFLVGIKNTSSSERSN 1179

Query: 704  NMEIFKLLSEEVFMFSTG 757
              +I   L E+    + G
Sbjct: 1180 EQDIQNNLDEDTVSLAYG 1197


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 686 ESLCQNNMEIFKLLSEEVFMFSTGQLTQTKAKHLKDTMCSEFSQ-IFQLCQFVLENSQNA 862
           E+L   N E           +STG    +K   LKD +  +F Q +  +   V+  S+++
Sbjct: 142 EALYDYNRETVSTCPLSFLSYSTGVERLSKELILKDLLSLQFQQALLAISPSVIVTSEHS 201

Query: 863 PLV 871
           PLV
Sbjct: 202 PLV 204


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 436 IFSFLILRIFKYCINTSPSIRMFLQSSQYILSNTLLIP 323
           I SF++L +F+  +    S  +FL +   ++S  LLIP
Sbjct: 505 IISFILLAVFRPFVGFKNSFCVFLVALTRVVSFALLIP 542


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +2

Query: 371 HPDAWTRVDTILEYSQNQETKYYALQILEQVILTR--WKILPRNQCEGIKKYIVGLIIKN 544
           H D + +  T+L  S+N  TK  +L++L +++L R    ++ R         ++ +++++
Sbjct: 202 HFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLNRANRSVMTRYISSAENLKLMMILLRD 261

Query: 545 SSDPVTMESNKVY 583
            S  +  E+  V+
Sbjct: 262 KSKNIQFEAFHVF 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,471,813
Number of Sequences: 5004
Number of extensions: 93396
Number of successful extensions: 245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 623552966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)