Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_E03
(1164 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0143 - 944169-947273 31 2.3
02_01_0281 - 1879519-1879605,1880761-1880851,1881343-1881849,188... 30 4.0
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 5.3
06_01_0895 + 6877386-6878475,6878577-6878838,6878932-6879017,687... 29 7.0
02_05_0716 - 31177877-31177943,31178028-31178104,31178396-311785... 29 7.0
01_06_0492 - 29769252-29769330,29769432-29769508,29769604-297697... 29 7.0
11_08_0084 + 28260647-28262575 29 9.3
>05_01_0143 - 944169-947273
Length = 1034
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 275 DINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQNQETKYYALQ 448
DI L+D + + +A +++ QDI L+E+ + W + T + Q +TKY LQ
Sbjct: 786 DIKLIDVVK--MENASPLEEKFRQDIDALLEENLEFWMKFSTSFQQIQGFQTKYEQLQ 841
>02_01_0281 -
1879519-1879605,1880761-1880851,1881343-1881849,
1881939-1882009,1882102-1882181,1882287-1882464
Length = 337
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 230 LEQQASKLLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTAL 364
+E SKL K D+N LD +VG + A +A IL ++
Sbjct: 187 MENTNSKLGKLGMKTDLNRLDKLVGAIMEAAPISSAIASRILVSV 231
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 29.5 bits (63), Expect = 5.3
Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 1/150 (0%)
Frame = +2
Query: 401 ILEYSQNQETKYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKV 580
++ Q+ E + + ++L+ ++ RW+ L + V LI + V +
Sbjct: 52 LVRKDQSSEVRLHGFKMLQHLVRLRWEELSVAERNEFANLTVNLIPE-----VVGPHEEW 106
Query: 581 YLKKLNMILI-QVLKREWPHNWETFISDIVGASKTNESLCQNNMEIFKLLSEEVFMFSTG 757
LK L+ +V++RE W T + IV S + I + L E++ + +
Sbjct: 107 ALKSQTAALVAEVVRREGVALWNTLLPSIVSLSNNGPIEAELVAMILRWLPEDITVHNE- 165
Query: 758 QLTQTKAKHLKDTMCSEFSQIFQLCQFVLE 847
L + + L + QI L +LE
Sbjct: 166 DLEGDRRRALLRGLTESLPQILPLLYSLLE 195
>06_01_0895 +
6877386-6878475,6878577-6878838,6878932-6879017,
6879117-6879274,6879554-6879630,6879719-6879785
Length = 579
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Frame = +2
Query: 437 YALQILEQVILTRWKILPRNQCEGIKKYIVGLIIK-------NSSDPVTMESNKVYLKKL 595
Y IL + W+I +QC GI +++ + ++++P TM + L
Sbjct: 5 YVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTL 64
Query: 596 NMILIQVLKREWPH 637
+++ L W H
Sbjct: 65 QKLIVLALLTLWSH 78
>02_05_0716 -
31177877-31177943,31178028-31178104,31178396-31178553,
31178647-31178732,31178847-31180303
Length = 614
Score = 29.1 bits (62), Expect = 7.0
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Frame = +2
Query: 437 YALQILEQVILTRWKILPRNQCEGIKKYIVGLIIK-------NSSDPVTMESNKVYLKKL 595
Y IL + W+I +QC GI +++ + ++++P TM + L
Sbjct: 5 YVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTL 64
Query: 596 NMILIQVLKREWPH 637
+++ + W H
Sbjct: 65 QKLMVLAMLTAWSH 78
>01_06_0492 -
29769252-29769330,29769432-29769508,29769604-29769761,
29769879-29769964,29770058-29770085,29771223-29771730
Length = 311
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +2
Query: 437 YALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILIQV 616
Y IL + + WK+ QC GI K++ I S V + + Y + +I +
Sbjct: 18 YVAMILAYLSIKWWKLFTPEQCSGINKFVAKFSIPLLSFQV-ISTTDPYDMNIKLIYSDI 76
Query: 617 LKR 625
L++
Sbjct: 77 LQK 79
>11_08_0084 + 28260647-28262575
Length = 642
Score = 28.7 bits (61), Expect = 9.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 278 INLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAW 385
++L + ++ C + D +R A ++L +K+H AW
Sbjct: 261 VDLHNLLLHCAQAVATDDRRSAHELLRQIKQHSSAW 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,050,463
Number of Sequences: 37544
Number of extensions: 491147
Number of successful extensions: 988
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3549867584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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