Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_E03
(1164 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 237 8e-63
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 30 2.7
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 30 2.7
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 30 2.7
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr... 30 3.6
Z81496-10|CAB04066.2| 324|Caenorhabditis elegans Hypothetical p... 29 6.3
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
family protein 4,isoform a protein.
Length = 1080
Score = 237 bits (581), Expect = 8e-63
Identities = 113/250 (45%), Positives = 161/250 (64%)
Frame = +2
Query: 239 QASKLLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQ 418
+A + ++D+ LLD +V + G +Q A IL +LKE D+WT+VD IL+YSQ
Sbjct: 11 EAKRQFAQGDRIDVTLLDQVVEIMNRMSGKEQAEANQILMSLKEERDSWTKVDAILQYSQ 70
Query: 419 NQETKYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLN 598
E+KY+ALQILE VI +WK LP+ Q EGIK YI+ + + SSD ME +++ L KLN
Sbjct: 71 LNESKYFALQILETVIQHKWKSLPQVQREGIKSYIITKMFELSSDQSVMEQSQLLLHKLN 130
Query: 599 MILIQVLKREWPHNWETFISDIVGASKTNESLCQNNMEIFKLLSEEVFMFSTGQLTQTKA 778
++L+Q++K++WP W TFI+DIV +SK NE++C NNM I LLSEEVF F + LTQ K
Sbjct: 131 LVLVQIVKQDWPKAWPTFITDIVDSSKNNETVCINNMNILSLLSEEVFDFGSQNLTQAKE 190
Query: 779 KHLKDTMCSEFSQIFQLCQFVLENSQNAPLVGVTLDTLLRFLNWIPLGLYXRNEIDKHID 958
+HLK C +F ++F LC +LE + +V TL TL RFL WIP+G I + +
Sbjct: 191 QHLKQQFCGQFQEVFTLCVSILEKCPSNSMVQATLKTLQRFLTWIPVGYVFETNITELLS 250
Query: 959 I*VLNVPMFR 988
L++ ++R
Sbjct: 251 ENFLSLEVYR 260
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 30.3 bits (65), Expect = 2.7
Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Frame = +2
Query: 479 KILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILIQVLKREWPHNWETFIS 658
+++P+ + ++ + ++ K +DP T ++ ++K L ++I L W +E + +
Sbjct: 1836 EVIPKVPLQWRRELFLRIMQKFDTDPQTAGTSMQHVKALQYLVIPTL--HWA--FERYDT 1891
Query: 659 D-IVGASKTNESLCQNNMEIFKLLSEEVFMFSTGQLTQTKAKHLKDTMCSEFSQIFQLCQ 835
D IVG + ++S ++M++ S + + + + +L D M F +QLC
Sbjct: 1892 DEIVGTAPIDDS--DSSMDVDPAGSSDNLVARLTSVIDSHRNYLSDGMVIVF---YQLCT 1946
Query: 836 FVLENS 853
++N+
Sbjct: 1947 LFVQNA 1952
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 30.3 bits (65), Expect = 2.7
Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Frame = +2
Query: 479 KILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILIQVLKREWPHNWETFIS 658
+++P+ + ++ + ++ K +DP T ++ ++K L ++I L W +E + +
Sbjct: 1842 EVIPKVPLQWRRELFLRIMQKFDTDPQTAGTSMQHVKALQYLVIPTL--HWA--FERYDT 1897
Query: 659 D-IVGASKTNESLCQNNMEIFKLLSEEVFMFSTGQLTQTKAKHLKDTMCSEFSQIFQLCQ 835
D IVG + ++S ++M++ S + + + + +L D M F +QLC
Sbjct: 1898 DEIVGTAPIDDS--DSSMDVDPAGSSDNLVARLTSVIDSHRNYLSDGMVIVF---YQLCT 1952
Query: 836 FVLENS 853
++N+
Sbjct: 1953 LFVQNA 1958
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 30.3 bits (65), Expect = 2.7
Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Frame = +2
Query: 479 KILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILIQVLKREWPHNWETFIS 658
+++P+ + ++ + ++ K +DP T ++ ++K L ++I L W +E + +
Sbjct: 1842 EVIPKVPLQWRRELFLRIMQKFDTDPQTAGTSMQHVKALQYLVIPTL--HWA--FERYDT 1897
Query: 659 D-IVGASKTNESLCQNNMEIFKLLSEEVFMFSTGQLTQTKAKHLKDTMCSEFSQIFQLCQ 835
D IVG + ++S ++M++ S + + + + +L D M F +QLC
Sbjct: 1898 DEIVGTAPIDDS--DSSMDVDPAGSSDNLVARLTSVIDSHRNYLSDGMVIVF---YQLCT 1952
Query: 836 FVLENS 853
++N+
Sbjct: 1953 LFVQNA 1958
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 30.3 bits (65), Expect = 2.7
Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Frame = +2
Query: 479 KILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILIQVLKREWPHNWETFIS 658
+++P+ + ++ + ++ K +DP T ++ ++K L ++I L W +E + +
Sbjct: 1842 EVIPKVPLQWRRELFLRIMQKFDTDPQTAGTSMQHVKALQYLVIPTL--HWA--FERYDT 1897
Query: 659 D-IVGASKTNESLCQNNMEIFKLLSEEVFMFSTGQLTQTKAKHLKDTMCSEFSQIFQLCQ 835
D IVG + ++S ++M++ S + + + + +L D M F +QLC
Sbjct: 1898 DEIVGTAPIDDS--DSSMDVDPAGSSDNLVARLTSVIDSHRNYLSDGMVIVF---YQLCT 1952
Query: 836 FVLENS 853
++N+
Sbjct: 1953 LFVQNA 1958
>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical
protein W03A3.2 protein.
Length = 1540
Score = 29.9 bits (64), Expect = 3.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 812 SQIFQLCQFVLENSQNAPLVGVTLDTLLR 898
SQI LC+ +L NS+N L + ++ LLR
Sbjct: 334 SQIHDLCKLLLFNSENLQLSDIAIEMLLR 362
>Z81496-10|CAB04066.2| 324|Caenorhabditis elegans Hypothetical
protein F09C6.7 protein.
Length = 324
Score = 29.1 bits (62), Expect = 6.3
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -1
Query: 261 KSKSLDACCSKVAIL-VKYIYLVNLFPF-FQNQNYFD*STFIP---HLIQHRENNLRRNQ 97
++ SL +K A+L K L LFP FQ Q TFIP H H+E R Q
Sbjct: 114 RAMSLKYMDTKKALLRTKLFSLHYLFPLLFQTQ------TFIPRQNHAQVHKETMQRHPQ 167
Query: 96 SNALPYILIRCFHEA*KS 43
N PY+ F EA K+
Sbjct: 168 DNYAPYLDFGGFSEAQKA 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,263,111
Number of Sequences: 27780
Number of extensions: 505721
Number of successful extensions: 1325
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3172075232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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