Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_E01
         (1292 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.47 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   7.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   7.6  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   7.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 639 PXPPPSXXPSXXXLFXPXPPPXAPPPXXPP 728
           P P P   P       P  P   PPP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 26.2 bits (55), Expect = 0.62
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 641 RXTPP-PXEXXPPGXRPXAPP 582
           R +PP P +  PPG  P APP
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 2.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 940 PXGGXXPPXXGGXXPPPP 887
           P GG  PP  G   PP P
Sbjct: 404 PAGGQLPPSAGAPMPPIP 421



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +3

Query: 693 PPPXAPPPXXPPXXXXRSPGGPPPXXXXXXPXXPXPGXAPP 815
           P   AP P   P    ++P    P      P    P  APP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +3

Query: 687 PXPPPXAPPPXXPPXXXXRSPGGPPP 764
           P   P AP    PP      P G PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 624 RRXGPPXPPPSXXPSXXXLFXPXPPPXAPP 713
           R  GPP P P   P     F P   P   P
Sbjct: 148 RYIGPPTPFPRFIPPNAYRFRPPQNPRFGP 177


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 624 RRXGPPXPPPSXXPSXXXLFXPXPPPXAPP 713
           R  GPP P P   P     F P   P   P
Sbjct: 148 RYIGPPTPFPRFIPPNAYRFRPPQNPRFGP 177


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 624 RRXGPPXPPPSXXPSXXXLFXPXPPPXAPP 713
           R  GPP P P   P     F P   P   P
Sbjct: 374 RHIGPPTPFPRFIPPNAYRFRPPLNPRFGP 403


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 624 RRXGPPXPPPSXXPSXXXLFXPXPPPXAPP 713
           R  GPP P P   P     F P   P   P
Sbjct: 386 RYIGPPTPFPRFIPPNAYRFRPPQNPRFGP 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,136
Number of Sequences: 438
Number of extensions: 9434
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44423310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)