Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D21
         (1213 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            87   7e-19
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    52   3e-08

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 87.4 bits (207), Expect = 7e-19
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 1/162 (0%)
 Frame = +3

Query: 354 FKXXXXXXXXXXKXALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDNSPCVLEILDTAGTE 530
           FK          K +L ++FV G F E  + TI   F  + + +D++    EI DTAG E
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84

Query: 531 QFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADLEH 710
           ++ S+  +Y +  Q  +VVY + N  +F   K   + + R + S  + I L GNKADL +
Sbjct: 85  RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQR-QASPNIVIALAGNKADLAN 143

Query: 711 QREVAHAEGAALAQMWGCPFVEASAKSRTNVNEMFAEIVREM 836
            R V + E    A      F+E SAK+  NVN++F  I +++
Sbjct: 144 SRVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKL 185


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
 Frame = +3

Query: 390 KXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNG 569
           K  + + + +  F  +Y PT  D Y   + VD     L + DTAG E +  +R L     
Sbjct: 19  KTCMLISYTTDSFPGEYVPTSFDNYSAPMVVDGVQVSLGLWDTAGQEDYDRLRPLSYPQT 78

Query: 570 QGFVVVYSLTNHQTFQDIKPMKELITRVK-GSERVPILLVGNKADLEHQRE 719
             F++ YS+ +  +F+++    +    +K      PI+LVG K DL   RE
Sbjct: 79  DVFLICYSVASPSSFENV--TSKWYPEIKHHCPDAPIILVGTKIDLREDRE 127


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 954,074
Number of Sequences: 2352
Number of extensions: 17197
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 137747739
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)