Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D19
         (1245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.33 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = -1

Query: 468 PXPXPXKXNPXFFPPFFXGXXPXPXXXFFXGXXPPPPXXGPPPP 337
           P P P    P    P   G  P P      G  PPPP   PPPP
Sbjct: 744 PAPAPIPVPPP--APIMGGPPPPPPPPGVAGAGPPPPP--PPPP 783



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 370 PPPPXXGAPPPXVFPFXXPPP 308
           PPPP    P P   P   PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPP 754



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 684 PPPXGGXKXPPXXGGPXPXXPXXXRXXXGPPP 779
           P P       P  GGP P  P       GPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 22/63 (34%), Positives = 22/63 (34%)
 Frame = -3

Query: 874 GFPPPXXXGVFFXFXXGGAXGXXKXPXXPPPXGGGPXXXRXXXGXXGXGPPXXGGXFXPP 695
           G PPP   G F  F  GG  G           GGGP       G  G GP   GG     
Sbjct: 198 GGPPPGPGG-FGGF--GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 694 XGG 686
            GG
Sbjct: 255 GGG 257



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/50 (36%), Positives = 19/50 (38%)
 Frame = -3

Query: 826 GGAXGXXKXPXXPPPXGGGPXXXRXXXGXXGXGPPXXGGXFXPPXGGGXP 677
           GG  G  +    P   GGGP       G  G GP   GG    P G G P
Sbjct: 227 GGGPGGFEG--GPGGFGGGPGGFGGGLGGFGGGPGGFGGG---PGGHGGP 271


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
 Frame = -3

Query: 799  PXXPPPXGGGPXXXRXXXGXXGXGPPXXGGXFXPPXGGGXPXXPP-FXPPXP 647
            P  P P  G P   +   G     PP        P  G  P  PP   PP P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 370  PPPPXXGAPPPXVFPFXXPPP 308
            PPPP    PPP   P    PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +3

Query: 735 PXXPXXXRXXXGPPPXGGGXXGXXXXPXAPPXK 833
           P  P   R   G PP G G       P  PP +
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.155    0.548 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,611
Number of Sequences: 5004
Number of extensions: 43095
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)