Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D18
(1183 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 32 0.14
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 30 0.54
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 29 0.95
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 29 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.7
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 29 1.7
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 28 2.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.9
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 27 3.8
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 27 3.8
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 27 5.1
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 5.1
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 6.7
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 6.7
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 6.7
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 8.9
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 8.9
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 8.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 8.9
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 8.9
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 32.3 bits (70), Expect = 0.14
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Frame = +1
Query: 373 SDIELKNNS-KHRLSVNQQPLPD--DDSTYDESYLNLRVKQEQTFTI----PSAQKKRKK 531
S++E K NS + S+ Q+ + DD T + V + T TI ++KK+K+
Sbjct: 161 SELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKKKKKR 220
Query: 532 NHKSESVVNSENDIESNTENN 594
N K++ +++ +IE+ TEN+
Sbjct: 221 NRKNQKKKSTKQNIEATTEND 241
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.3 bits (65), Expect = 0.54
Identities = 23/94 (24%), Positives = 40/94 (42%)
Frame = +1
Query: 331 ADSPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPS 510
AD P+ + PE D+++K+ +H N + P T S + QE+ ++P+
Sbjct: 366 ADQPENSTKQENPEEDMQIKDAEEHS---NLESTPAAQQT---SEVEANNHQEKPSSLPA 419
Query: 511 AQKKRKKNHKSESVVNSENDIESNTENNNVIGES 612
+ + N E+ +E E NN ES
Sbjct: 420 VE---QINVNEENNTPETEGLEDEKEENNTAAES 450
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.5 bits (63), Expect = 0.95
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 5/178 (2%)
Frame = +1
Query: 130 SIDTSDREEMAKATNINQSDVDSEYGQSYKKKLHKELFVNGEHETESRD---QPXXXXXX 300
S+ + RE A+N +SD + KKL V+G + S+ +
Sbjct: 856 SVSSKSRETRTSASN--ESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKP 913
Query: 301 XXXXXXXXXXADSPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRV 480
AD K+ E E + +S V +Q D + E + V
Sbjct: 914 EPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE--PVKRQKTADVNDDVGEEEVKQSV 971
Query: 481 KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTEN-NNVIGESNFE-TSTLSHQAD 648
++ +++ K + KS + + + TEN N++ G+SN + +T+ D
Sbjct: 972 SEQVDSAQLTSEPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTD 1029
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 343 KKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKK 522
+K+ +++ E +++ N+ LS +Q + + Y + LN+R+ +E FT+ S KK
Sbjct: 17 EKRTLEIRIEEAVQIYQNA---LSAQKQGDDNAATKYYDELLNVRILRELPFTVNSNYKK 73
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/74 (22%), Positives = 38/74 (51%)
Frame = +1
Query: 373 SDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESV 552
SDI +++ LS+ D ++YD++ ++ +T + A+ +++KN ++
Sbjct: 1075 SDINEVDHTIASLSLKLFQAEDTKNSYDQTSPEATQERNRTISSKLAEMEKQKNESKAAL 1134
Query: 553 VNSENDIESNTENN 594
+N + +N ENN
Sbjct: 1135 EQMKNYV-TNIENN 1147
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 28.7 bits (61), Expect = 1.7
Identities = 25/97 (25%), Positives = 45/97 (46%)
Frame = +1
Query: 343 KKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKK 522
K + + +E + +E K R+ ++ L + + +E L RV E+ A+K
Sbjct: 60 KTRTVIIEKRATLE---EVKERMEYWRRQLLEPEKGSEEYSLKERV--ERYHQELEAKKL 114
Query: 523 RKKNHKSESVVNSENDIESNTENNNVIGESNFETSTL 633
R+K K NS + NTE ++G S+F ++ L
Sbjct: 115 RRKQKKVNKEKNSPRLVGENTELAAIMGISSFGSTNL 151
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 439 DDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNV 600
+D + D S ++ + S +KK+KK KS+ +N EN T NN+
Sbjct: 35 EDLSMDGSNDGVKDSPDSNDDSQSKKKKKKKLKKSQQPLNEENYPRLQTTENNL 88
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 2.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 285 CWLIP*FCLMFTVYKEFFVKFLFIALSIFRVYI*LIYICSFCHFFSIRCI 136
C L+ F L+F + F FLF IF VY I F FF + C+
Sbjct: 115 CLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFL-CV 163
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.5 bits (58), Expect = 3.8
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +1
Query: 499 TIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNFETSTLSHQA 645
T S +K KKN KSES +S ND S + ESN E + S ++
Sbjct: 195 TKTSKKKSSKKNSKSESNQDSSNDRSSTAPST---AESNNEHLSSSQKS 240
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 475 RVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNFETS 627
++ ++ ++ S KKR KS ++ + + N+ + + IG S F+TS
Sbjct: 248 KLSNGRSSSLDSLAKKRMSKSKSTPQISKKFSVPLNSASKSPIGSSLFKTS 298
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 27.1 bits (57), Expect = 5.1
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = +1
Query: 370 ESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSES 549
E D K N+K N L D D D+ + K E+ KK HK
Sbjct: 7 EGDENRKENTKSNTKPNFDDLDDLDDILDDLDVPSAFKNEE--------KKNIDEHKQTG 58
Query: 550 VVNSENDIESNTEN-NNVIGE--SNFE 621
+ EN+ N +N N++I E S FE
Sbjct: 59 NTSKENERIKNDDNLNSLIQEMMSKFE 85
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.1 bits (57), Expect = 5.1
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +1
Query: 343 KKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYL--NLRVKQEQTFTIPSAQ 516
K+K + EP KN+ + ++ + YDE L N + ++ +
Sbjct: 15 KRKNERTEPLPRRIFKNDKPSKFKSKRKEKDKNSDAYDEMLLNNNFTLLDQEEPMVEIGS 74
Query: 517 KKRKKNHKSESVVNSENDIESNTENNNVI 603
KK + ++ SE + + +E + +N+ I
Sbjct: 75 KKSRNDNDSEG-IRDKGGVEISNKNDPYI 102
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 517 KKRKKNHKSESVVNSEN-DIESNTENNNV 600
KK+K+ KS++ V +N D ESN NN V
Sbjct: 19 KKKKRQAKSKNSVAEDNVDRESNDGNNQV 47
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 172 NINQSDVDSEYGQSYKKKLHKELFV 246
N+N ++V+S Q+YKK+L +++ +
Sbjct: 90 NVNDTEVESMDSQAYKKELIEQIMI 114
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 532 NHKSESVVNSENDIESNTENNNVIGESNFETST 630
N +S SV+ S+ SNT N N G S S+
Sbjct: 781 NRRSSSVLQSQKSTSSNTSNRNNGGYSGSRPSS 813
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 436 DDDSTYDESYLNLRV-KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENN 594
+D + Y+ N + ++ F +PS+ + + S S +N+ N+ SNT N
Sbjct: 32 NDSNPYENRSSNSGLNRRNSVFGLPSSGLSSRLSKPSLSSINNSNNSSSNTGGN 85
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/71 (21%), Positives = 30/71 (42%)
Frame = +1
Query: 370 ESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSES 549
+ D E S++ ++PLPD +S +K+ + +RK+N S S
Sbjct: 557 KGDEESPRVSRNTSLARRKPLPDTESHSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTS 616
Query: 550 VVNSENDIESN 582
+ +E++
Sbjct: 617 TLQISAPLETS 627
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 454 DESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVN-SENDIE 576
DES LN +VK Q I AQ+ +++ +SE ++ +E D+E
Sbjct: 339 DESQLNAQVKNVQA-KIRRAQRDQQRQEESEGSLDVTEIDVE 379
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 8.9
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 346 KKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKR 525
++ ++ E E D E + S P D+ D+ +L + +E++ + ++KK+
Sbjct: 95 EQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMD-DLSLDEEESESSEKSKKKK 153
Query: 526 KKNHKSE--SVVNSENDIESNTEN 591
KK+ + S + DIES+ ++
Sbjct: 154 KKSKSKDDGSEALDDGDIESSEKD 177
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 505 PSAQKKRKKNHKSESVVNSENDIESNTE 588
P+A K N E ++N++ ESN E
Sbjct: 15 PNASVKSSDNDHKEELINNQKSFESNVE 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,827
Number of Sequences: 5004
Number of extensions: 49166
Number of successful extensions: 289
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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