Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D18
(1183 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 33 0.39
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 32 0.91
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 32 0.91
Z82090-5|CAB05009.1| 159|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 31 1.6
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 31 1.6
U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of p... 31 2.1
AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of... 31 2.1
AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of... 31 2.1
Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical pr... 30 3.7
AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical ... 30 3.7
AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical ... 30 3.7
AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical ... 30 3.7
AL117207-17|CAI79269.1| 421|Caenorhabditis elegans Hypothetical... 29 4.8
Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical pr... 29 6.4
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 29 6.4
AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans Na/Ca,K-excha... 29 6.4
AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical ... 29 6.4
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 29 8.5
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 29 8.5
Z78017-2|CAD44160.1| 615|Caenorhabditis elegans Hypothetical pr... 29 8.5
Z73976-10|CAD44151.1| 615|Caenorhabditis elegans Hypothetical p... 29 8.5
Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical p... 29 8.5
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 29 8.5
U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily ass... 29 8.5
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 33.1 bits (72), Expect = 0.39
Identities = 32/156 (20%), Positives = 61/156 (39%)
Frame = +1
Query: 121 SDASIDTSDREEMAKATNINQSDVDSEYGQSYKKKLHKELFVNGEHETESRDQPXXXXXX 300
SD+S D R++M + D E + KKK K+ + E E E +D+
Sbjct: 113 SDSSEDKKKRKQMRDKKKQEEEDKKKEEEEKDKKKKDKKKEEDDEEE-EQKDKKKKDEKN 171
Query: 301 XXXXXXXXXXADSPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRV 480
D KKK K + + D + + K + +++ DDD ++ + +
Sbjct: 172 DDD--------DEEDKKKDKKKKKDDNDEEEKEKDKKKKDKKKDDDDDEDENDKKKDKKK 223
Query: 481 KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTE 588
K++ + K+K K + ++D E +
Sbjct: 224 KKDDKDDDENEDDKKKDKKKKKDDKEKDDDDEEEKD 259
Score = 31.5 bits (68), Expect = 1.2
Identities = 28/154 (18%), Positives = 56/154 (36%)
Frame = +1
Query: 136 DTSDREEMAKATNINQSDVDSEYGQSYKKKLHKELFVNGEHETESRDQPXXXXXXXXXXX 315
D + E+ K ++D D E + KK K+ N E E E +
Sbjct: 155 DDEEEEQKDKKKKDEKNDDDDEEDKKKDKKKKKD--DNDEEEKEKDKKKKDKKKDDDDDE 212
Query: 316 XXXXXADSPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQT 495
KKKK + + + + K K + +++ DD+ D+ + + +
Sbjct: 213 DENDKKKDKKKKKDDKDDDENEDDKKKDKKKKKDDKEKDDDDEEEKDKKKKDKKKNDDDE 272
Query: 496 FTIPSAQKKRKKNHKSESVVNSENDIESNTENNN 597
+KK+K + E N + D + ++ +
Sbjct: 273 EDKKKDKKKKKDDDDDEDEDNKKKDKKKKKDDKD 306
Score = 28.7 bits (61), Expect = 8.5
Identities = 29/155 (18%), Positives = 54/155 (34%)
Frame = +1
Query: 136 DTSDREEMAKATNINQSDVDSEYGQSYKKKLHKELFVNGEHETESRDQPXXXXXXXXXXX 315
D D + K + D D + + KKK K+ + E + D+
Sbjct: 210 DDEDENDKKKDKKKKKDDKDDDENEDDKKKDKKKK--KDDKEKDDDDEEEKDKKKKDKKK 267
Query: 316 XXXXXADSPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQT 495
D K KK K + + D E ++N K + D+D ++ K++
Sbjct: 268 NDDDEEDKKKDKKKKKDDDDD-EDEDNKKKDKKKKKDDKDDEDEEKEKDKKKKDKKKDDD 326
Query: 496 FTIPSAQKKRKKNHKSESVVNSENDIESNTENNNV 600
+KK KK + E+ + + ++V
Sbjct: 327 DDDDEKEKKDKKKKDDKDDDEDEDKDDKKKKKDDV 361
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 31.9 bits (69), Expect = 0.91
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 502 IPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNFETSTLS 636
+P Q K +E VV+ E+D E TE+N + N E +T S
Sbjct: 683 MPHPQPDEKMETSTEGVVDEESDEERTTESNEEVVTKNAEATTPS 727
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 31.9 bits (69), Expect = 0.91
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 502 IPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNFETSTLS 636
+P Q K +E VV+ E+D E TE+N + N E +T S
Sbjct: 683 MPHPQPDEKMETSTEGVVDEESDEERTTESNEEVVTKNAEATTPS 727
>Z82090-5|CAB05009.1| 159|Caenorhabditis elegans Hypothetical
protein ZK337.4 protein.
Length = 159
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 430 LPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNN 597
L DDD Y+E V++ T + +KK ++N +E +ND + NNN
Sbjct: 59 LLDDDMGYEEPENEANVRENGGET-ENVEKKLEENKDNEGAAEEQNDQQKKEVNNN 113
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/78 (21%), Positives = 33/78 (42%)
Frame = +1
Query: 412 SVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTEN 591
+V Q PD D+ YD +L+ Q+Q P+ + + ++ ++N ++ N
Sbjct: 389 TVTVQSDPDLDTDYDNLIQSLKELQDQAIVRPANHSSNRLSEETRKLLNKRRFMDRNDPQ 448
Query: 592 NNVIGESNFETSTLSHQA 645
I + E H+A
Sbjct: 449 FKSISDKCREAVQKDHEA 466
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/78 (21%), Positives = 33/78 (42%)
Frame = +1
Query: 412 SVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTEN 591
+V Q PD D+ YD +L+ Q+Q P+ + + ++ ++N ++ N
Sbjct: 128 TVTVQSDPDLDTDYDNLIQSLKELQDQAIVRPANHSSNRLSEETRKLLNKRRFMDRNDPQ 187
Query: 592 NNVIGESNFETSTLSHQA 645
I + E H+A
Sbjct: 188 FKSISDKCREAVQKDHEA 205
>U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of
presenilin defectprotein 1 protein.
Length = 558
Score = 30.7 bits (66), Expect = 2.1
Identities = 22/96 (22%), Positives = 45/96 (46%)
Frame = +1
Query: 334 DSPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSA 513
D P ++ PE+DI + ++ V + L ++DS D + R Q++ + PS
Sbjct: 17 DVPSEESTIAGPETDIPAETIEENVPEVEENTLLEEDSLVDVD--SPRPSQQR--SKPSK 72
Query: 514 QKKRKKNHKSESVVNSENDIESNTENNNVIGESNFE 621
K+++K S +E +I++ + + +N E
Sbjct: 73 SKRKRKRSSSGESSAAEPEIDAGAKVKGPLSNTNKE 108
>AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of
presenilin 1 protein.
Length = 558
Score = 30.7 bits (66), Expect = 2.1
Identities = 22/96 (22%), Positives = 45/96 (46%)
Frame = +1
Query: 334 DSPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSA 513
D P ++ PE+DI + ++ V + L ++DS D + R Q++ + PS
Sbjct: 17 DVPSEESTIAGPETDIPAETIEENVPEVEENTLLEEDSLVDVD--SPRPSQQR--SKPSK 72
Query: 514 QKKRKKNHKSESVVNSENDIESNTENNNVIGESNFE 621
K+++K S +E +I++ + + +N E
Sbjct: 73 SKRKRKRSSSGESSAAEPEIDAGAKVKGPLSNTNKE 108
>AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of
presenilin defect protein.
Length = 558
Score = 30.7 bits (66), Expect = 2.1
Identities = 22/96 (22%), Positives = 45/96 (46%)
Frame = +1
Query: 334 DSPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSA 513
D P ++ PE+DI + ++ V + L ++DS D + R Q++ + PS
Sbjct: 17 DVPSEESTIAGPETDIPAETIEENVPEVEENTLLEEDSLVDVD--SPRPSQQR--SKPSK 72
Query: 514 QKKRKKNHKSESVVNSENDIESNTENNNVIGESNFE 621
K+++K S +E +I++ + + +N E
Sbjct: 73 SKRKRKRSSSGESSAAEPEIDAGAKVKGPLSNTNKE 108
>Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical
protein T13F3.8 protein.
Length = 212
Score = 30.3 bits (65), Expect = 2.8
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +1
Query: 334 DSPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSA 513
D PKK++ K E E E K + + V ++ DDS DE + K++ +
Sbjct: 88 DEPKKEEEKKEEEKKKEEKKEEEKKEEVKEEE-KKDDSKRDEKKKDGEKKEDDENKEDNE 146
Query: 514 QKKRKKNH----KSESVVNSE 564
+KK +K K E +V E
Sbjct: 147 KKKEEKKEDEKPKKEEIVPQE 167
>Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 29.9 bits (64), Expect = 3.7
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 415 VNQQPLPDDDSTYDESYLNLR---VKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNT 585
VN L ++ D+ LR VK+ ++ S ++K+KK+ ES S IE +T
Sbjct: 83 VNLPVLSEEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142
Query: 586 ENNNVIGESNFETSTLSHQA 645
+ + + E++ H A
Sbjct: 143 NYSGPVTTESLESNVKFHHA 162
>AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 29.9 bits (64), Expect = 3.7
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 415 VNQQPLPDDDSTYDESYLNLR---VKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNT 585
VN L ++ D+ LR VK+ ++ S ++K+KK+ ES S IE +T
Sbjct: 83 VNLPVLSEEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142
Query: 586 ENNNVIGESNFETSTLSHQA 645
+ + + E++ H A
Sbjct: 143 NYSGPVTTESLESNVKFHHA 162
>AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical
protein Y81G3A.1 protein.
Length = 243
Score = 29.9 bits (64), Expect = 3.7
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 415 VNQQPLPDDDSTYDESYLNLR---VKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNT 585
VN L ++ D+ LR VK+ ++ S ++K+KK+ ES S IE +T
Sbjct: 83 VNLPVLSEEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142
Query: 586 ENNNVIGESNFETSTLSHQA 645
+ + + E++ H A
Sbjct: 143 NYSGPVTTESLESNVKFHHA 162
>AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical
protein H27M09.5 protein.
Length = 341
Score = 29.9 bits (64), Expect = 3.7
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +1
Query: 337 SPKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQ 516
S K K K +S E K +++ ++ D ++ D + + K Q ++ S++
Sbjct: 47 SKKSMKSKKSKKSKREKKGDNEDEKENYKEDGNDHNNGSDRKEGSKKKKSRQK-SMKSSR 105
Query: 517 KKRKKNHKSESVVNSEND--IESNTENNNV 600
KRKK H S S S D S ++ NNV
Sbjct: 106 SKRKKRHSSGSKRGSSRDKRDSSRSKKNNV 135
>AL117207-17|CAI79269.1| 421|Caenorhabditis elegans Hypothetical
protein Y60A3A.25 protein.
Length = 421
Score = 29.5 bits (63), Expect = 4.8
Identities = 16/85 (18%), Positives = 40/85 (47%)
Frame = +1
Query: 373 SDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESV 552
+D +N +++Q + + +S ++ + K+ + S KK++ ++E+
Sbjct: 169 NDDNFNDNFTEDDAISQISFDSEIKSETDSMVSRKRKRNREDAQNSYDKKKRIRDENETF 228
Query: 553 VNSENDIESNTENNNVIGESNFETS 627
S+ N N N++ E++F T+
Sbjct: 229 FKSQKLTHENLLNQNILNEAHFRTA 253
>Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical
protein F35C12.2a protein.
Length = 596
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 373 SDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQ 492
S++ ++++ HRL+VNQ +PD S+ E +L +QE+
Sbjct: 344 SNVNIESHDMHRLNVNQS-MPDRRSSQIEEIKSLLEEQEE 382
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 29.1 bits (62), Expect = 6.4
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 361 VEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKK-----R 525
VE E+ +K +K + N + +D +E L ++++++ QKK R
Sbjct: 41 VEVETKKGMKKKNKPKKVENTERPEEDAKCVEERRLAKKLRRKEQMAANRKQKKERLAKR 100
Query: 526 KKNHKSESVVNSENDIESNTE 588
K+ S SEN E+ TE
Sbjct: 101 KQKEAESSAKKSENATETTTE 121
>AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans
Na/Ca,K-exchanger protein.
Length = 596
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 373 SDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQ 492
S++ ++++ HRL+VNQ +PD S+ E +L +QE+
Sbjct: 344 SNVNIESHDMHRLNVNQS-MPDRRSSQIEEIKSLLEEQEE 382
>AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical
protein W03F9.10 protein.
Length = 602
Score = 29.1 bits (62), Expect = 6.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 436 DDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTE 588
DD ++ DE+ NL K+ Q + K+KK K + + +IE+ E
Sbjct: 5 DDYNSDDEANKNLSKKELQELKRKQQKSKKKKESKKRAKATKQAEIETREE 55
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 28.7 bits (61), Expect = 8.5
Identities = 29/112 (25%), Positives = 44/112 (39%)
Frame = +1
Query: 247 NGEHETESRDQPXXXXXXXXXXXXXXXXADSPKKKKIKVEPESDIELKNNSKHRLSVNQQ 426
N E + E +D+P K+KK K E SD + K + S
Sbjct: 23 NDEIKKEVKDEPMASDSEVPFGELMKRDKKEKKQKKRKAESGSDEDDYKPEKRKSSAKNG 82
Query: 427 PLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESN 582
D S ++ Y K E+ KK KKN+K ++ +SE+D E +
Sbjct: 83 KKKDVGSDSEDDY-----KPEK--------KKSKKNNKKKAQESSEDDDEES 121
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 28.7 bits (61), Expect = 8.5
Identities = 29/112 (25%), Positives = 44/112 (39%)
Frame = +1
Query: 247 NGEHETESRDQPXXXXXXXXXXXXXXXXADSPKKKKIKVEPESDIELKNNSKHRLSVNQQ 426
N E + E +D+P K+KK K E SD + K + S
Sbjct: 23 NDEIKKEVKDEPMASDSEVPFGELMKRDKKEKKQKKRKAESGSDEDDYKPEKRKSSAKNG 82
Query: 427 PLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESN 582
D S ++ Y K E+ KK KKN+K ++ +SE+D E +
Sbjct: 83 KKKDVGSDSEDDY-----KPEK--------KKSKKNNKKKAQESSEDDDEES 121
>Z78017-2|CAD44160.1| 615|Caenorhabditis elegans Hypothetical
protein T07C12.12 protein.
Length = 615
Score = 28.7 bits (61), Expect = 8.5
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 340 PKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQT 495
P KKKIK EPESD +++ L QP+ + ++E +N + +E T
Sbjct: 417 PPKKKIKSEPESDDDIQ---IIELVSPSQPV-KKEKLFEEETINSELDEENT 464
>Z73976-10|CAD44151.1| 615|Caenorhabditis elegans Hypothetical
protein T07C12.12 protein.
Length = 615
Score = 28.7 bits (61), Expect = 8.5
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 340 PKKKKIKVEPESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQT 495
P KKKIK EPESD +++ L QP+ + ++E +N + +E T
Sbjct: 417 PPKKKIKSEPESDDDIQ---IIELVSPSQPV-KKEKLFEEETINSELDEENT 464
>Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical
protein C39E9.11 protein.
Length = 405
Score = 28.7 bits (61), Expect = 8.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 364 EPESDIELKNNSKHRLSVNQQPLPDDDSTYDES 462
E ESD E++ K+ L+ Q L DD++ +D +
Sbjct: 10 ESESDEEMETQQKNSLAPQNQQLVDDEAFFDNT 42
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 28.7 bits (61), Expect = 8.5
Identities = 29/112 (25%), Positives = 44/112 (39%)
Frame = +1
Query: 247 NGEHETESRDQPXXXXXXXXXXXXXXXXADSPKKKKIKVEPESDIELKNNSKHRLSVNQQ 426
N E + E +D+P K+KK K E SD + K + S
Sbjct: 23 NDEIKKEVKDEPMASDSEVPFGELMKRDKKEKKQKKRKAESGSDEDDYKPEKRKSSAKNG 82
Query: 427 PLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESN 582
D S ++ Y K E+ KK KKN+K ++ +SE+D E +
Sbjct: 83 KKKDVGSDSEDDY-----KPEK--------KKSKKNNKKKAQESSEDDDEES 121
>U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 226 protein.
Length = 560
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 508 SAQKKRKKNHKSESVVNSENDIESNTENNN 597
S + KRK+N+K + +N+ +S+ EN N
Sbjct: 511 SEKNKRKRNNKKNKKIEQKNEQKSSGENGN 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,141,656
Number of Sequences: 27780
Number of extensions: 268990
Number of successful extensions: 1321
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3234681980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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