Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D18
         (1183 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   5.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   6.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   9.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   9.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   9.1  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 481 KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNFETS 627
           K E ++       K +   K+E   + E  I S+  NN +   SN+  +
Sbjct: 289 KNENSYRKYRETSKERSRDKTERERSKERKIISSLSNNYISNISNYNNN 337


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 481 KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNFETS 627
           K E+ +     + K +   K E   + E  I S+  NN +   SN+  +
Sbjct: 51  KNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNISNYNNN 99


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 983 SXXXSRXLXLQFLAYHDLVQLLDMKQFDF-STLLHCLQS 870
           S   S+ L  ++L+  D+   L  K+  F STLL C+QS
Sbjct: 2   SSSDSKSLLKKYLS-KDVFDQLKTKKTSFDSTLLDCIQS 39


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 481 KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNF 618
           K E+ +     + K +   K E   + E  I S+  NN +   SN+
Sbjct: 51  KNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNISNY 96


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 983 SXXXSRXLXLQFLAYHDLVQLLDMKQFDF-STLLHCLQS 870
           S   S+ L  ++L+  D+   L  K+  F STLL C+QS
Sbjct: 18  SSSDSKSLLKKYLS-KDVFDQLKTKKTSFDSTLLDCIQS 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,068
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40247334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)