Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D17
         (1358 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55YS0 Cluster: Putative uncharacterized protein; n=2; ...    35   4.3  
UniRef50_Q0E0V7 Cluster: Os02g0518800 protein; n=1; Oryza sativa...    35   5.6  
UniRef50_A5C4J3 Cluster: Putative uncharacterized protein; n=1; ...    34   9.8  

>UniRef50_Q55YS0 Cluster: Putative uncharacterized protein; n=2;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 726

 Score = 35.1 bits (77), Expect = 4.3
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = +3

Query: 396 VSQWDNXLXDKGTDXXGFGDNGRQDSNRANFGGAGG 503
           +S  DN     G D  GFGD G  D N  NFG AGG
Sbjct: 670 MSGMDNFAGMGGMDSNGFGDLGGIDMNDFNFGDAGG 705


>UniRef50_Q0E0V7 Cluster: Os02g0518800 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os02g0518800 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 143

 Score = 34.7 bits (76), Expect = 5.6
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -3

Query: 498 PPRQNL--PGCCLVGRCP-RNXXCLSPCLIRXCPIGTPVXTPAVQGPEKR---KXXLVPP 337
           PPR  +  P CC++  CP R+   LSP      P+ TP  +PA  GP +R   +   +PP
Sbjct: 9   PPRSCVLPPRCCILVLCPPRSRGPLSPP--SPLPLPTPTSSPAAAGPIRRGRHRGRPLPP 66

Query: 336 XP 331
            P
Sbjct: 67  LP 68


>UniRef50_A5C4J3 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 171

 Score = 33.9 bits (74), Expect = 9.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 423 DKGTDXXGFGDNGRQDSNRANFGGAG 500
           DKG+D  GFG  G  D +R  FGG G
Sbjct: 8   DKGSDRGGFGGGGGGDLDRGGFGGRG 33


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,228,928
Number of Sequences: 1657284
Number of extensions: 11191976
Number of successful extensions: 17830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17697
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 141322928891
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)