Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D17
         (1358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    30   4.9  
01_01_0519 - 3817369-3817704                                           29   6.4  
03_06_0106 - 31682200-31682775                                         29   8.5  

>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -3

Query: 504 NHPPRQ-NLPGCCLVGRCPRNXXCLSPC-LIRXCPIGTPVXTPAVQGPE 364
           N P R  +  GCC    CP    C+ PC L   CP  T   T  +  P+
Sbjct: 167 NFPSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNKTTGICDPK 215


>01_01_0519 - 3817369-3817704
          Length = 111

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 537 QGFPPRRVIPXNHPPRQNLPGCCLVG 460
           Q F  RRV P   PP   +PGC   G
Sbjct: 70  QAFHTRRVPPAQDPPSPKVPGCIFCG 95


>03_06_0106 - 31682200-31682775
          Length = 191

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 393 VXTPAVQGPEKRKXXLVPPXPXFRAGAVXXSRGXTFCGGXIPP 265
           V T A++G  KR+  L  P P  +AGAV          G  PP
Sbjct: 66  VPTEAMEGRSKRRHRLGKPPPDLQAGAVGGCADGRGNKGPAPP 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,703,583
Number of Sequences: 37544
Number of extensions: 378565
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4283391936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)