Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D16
         (1277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.26 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 22/72 (30%), Positives = 22/72 (30%)
 Frame = +1

Query: 892  FFXXGXGGGGGGXXXXXKXPPPPGGXGXXXFGXXXXXPXXXXXXXPXXXGGGXGFXPPXG 1071
            F   G  GGG G        PPPG  G   FG                 GGG G      
Sbjct: 180  FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGG--EGHHHGGHGGFGGGPGGFEGGP 237

Query: 1072 GGXXXXPXXXGG 1107
            GG    P   GG
Sbjct: 238  GGFGGGPGGFGG 249


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +3

Query: 1059 PPPXGGXXGXPPXXGGXPXXKXXXXXGPXXGPXPXXGXGXGGXXPXXPPP 1208
            PPP        P     P        G    P P  G    G  P  PPP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,006
Number of Sequences: 5004
Number of extensions: 42060
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)