Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D15
         (1233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    58   3e-09
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    29   1.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   7.1  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    27   7.1  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    27   7.1  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   9.3  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   9.3  

>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
 Frame = +3

Query: 324 HLKSAYPPMXLLELQKLIDXNRVXISKPIDIASLIKSGLYTLNPDQKHFGVNLTDDGADI 503
           HLK     + L  +Q+ ID  R+  SK I +  L+ S         KH GV LT D   +
Sbjct: 68  HLKKPLR-LGLGRVQEWIDRGRLDASKTITMKDLLDSRCCR---GIKH-GVELTADEPGL 122

Query: 504 FAAKINIEVQWASEQVIAAIEKNGGVITTAYYDPHSLFILKNPQRFFETGQAIPRRMIP- 680
               I+IEV  A+ Q I  I+  GG ITT Y+ P +L    +P  F    +  PR  +P 
Sbjct: 123 LKTAISIEVSKATVQAIQQIKNAGGSITTVYFSPLALRAHLHPSSF----RTPPRPPLPV 178

Query: 681 PPDAIEFYTSAATRGYLADPEKISQ 755
               I +YT+    GYLA+ + I +
Sbjct: 179 SKKDIRYYTNPHFAGYLANVKNIRE 203


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 675 IPPPDAIEFYTSAATRGYLADPEKISQERLKLSQKYGYTL 794
           +P P+  + Y   A  GY  DP +IS+ER KL     Y L
Sbjct: 161 VPEPETKDSYGFGARYGYPTDP-RISRERAKLRMWKEYFL 199


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 928  SSSFGFKMHSSFKLITQPGCNPKNICLGSFL 836
            ++SF   M S FK + +P  +PKN   G FL
Sbjct: 2798 ANSFYDSMSSGFKGLKKPFTDPKNNSAGKFL 2828


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 617 YIEKSSKVF*NWSSYSKKNDSSARC 691
           Y EKSSK    + S +K +DSS+ C
Sbjct: 17  YFEKSSKSSKKYGSQNKDSDSSSTC 41


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 710 CCNTWLFS*SRKNISRKIK 766
           CCN +LFS ++K + +KI+
Sbjct: 125 CCNIYLFSENKKPVDQKIR 143


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +3

Query: 726 YLADPEKISQERLKLSQKYGYTLPNLESDPQYDMLTDRKDPRQIFFGLQPGWVINLKD-E 902
           +L   EK ++++L+  +++GY    LES    +     +D    +   +P  ++N +D E
Sbjct: 231 FLVKKEK-TKKQLE-EEEHGYERFLLESAQSKEARKVLEDLSSSYVKQRPSVLVNTEDDE 288

Query: 903 CILKPKDEELLQXYL 947
             +KP DE+ L  Y+
Sbjct: 289 NGIKPSDEDFLLKYM 303


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 708 SAATRGYLADPEKI--SQERLKLSQKYGYTLPNLESDPQYDMLT 833
           S A+      P +I   + R   +Q   YTLP+L S P Y+  T
Sbjct: 131 STASNSSTLTPNRIYGDRNRQDYAQSSRYTLPSLPSSPSYNCPT 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,684,490
Number of Sequences: 5004
Number of extensions: 70261
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)