Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D15
         (1233 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   3.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   7.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   7.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   9.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   9.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   9.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 789 TLPNLESDPQYDMLTDRKDPRQIFFGLQPGWVINLKDECILKPK 920
           TL  +    + D+  +++    I   L P W   +   CILKPK
Sbjct: 2   TLTAVRKMTKRDVFIEKEQMMNILMFL-PSWDGKMPQPCILKPK 44


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 516 FLQQKCQLHHQLN*HQNAFGQDSMCITQILSSWQYQW 406
           +LQQ+ Q HHQ +  ++A  Q+       L   Q+Q+
Sbjct: 98  YLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQF 134


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 484 VKLTPKCFW--SGFNVYNPDFIKLAISMGLDM 395
           +K+   C++  SG  +  PD   L + MGL M
Sbjct: 317 IKILGDCYYCISGAPIERPDHAVLCVYMGLSM 348


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 668 SWNSLTSFKKPLRIFQ 621
           SWN L   K+P+++F+
Sbjct: 432 SWNPLMQPKQPIKLFE 447


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 605 SQFIYIEKSSKVF*NWSSYSK 667
           S+F Y+ K +K    W SYS+
Sbjct: 530 SEFAYLGKPTKEDSEWPSYSR 550


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 605 RIIVGCSNNTTIFLNRCNNLFTCPLYFYINF 513
           +II   SN T    N  NN     LY+ IN+
Sbjct: 302 KIISSLSNKTIHNNNNYNNYNNKKLYYNINY 332


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 376 INFCNSKSXIGGYALFKCXFRPRIXTXIC 290
           + +CNS      YALF   FR    + IC
Sbjct: 50  LGYCNSAINPCIYALFSKDFRFAFKSIIC 78


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 376 INFCNSKSXIGGYALFKCXFRPRIXTXIC 290
           + +CNS      YALF   FR    + IC
Sbjct: 498 LGYCNSAINPCIYALFSKDFRFAFKSIIC 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,851
Number of Sequences: 438
Number of extensions: 5035
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42022050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)