Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D14
(1195 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 389 e-109
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 361 e-101
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 316 4e-87
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 300 2e-82
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 279 7e-76
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 206 6e-54
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 167 3e-42
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 144 2e-35
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 116 6e-27
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 31 0.32
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 29 1.7
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 29 1.7
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 28 2.9
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 27 3.9
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 5.1
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 27 5.1
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 27 5.1
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 26 9.0
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 389 bits (958), Expect = e-109
Identities = 182/291 (62%), Positives = 230/291 (79%)
Frame = +1
Query: 139 DAEQFSTFFEAAPIFSIPGRXFPVDIXYTKAPEAXYVAACVVSVLQIHATQPLGDILVFL 318
DAE+FS +F+ AP+F +PGR +PVDI YT PEA Y+ A + ++LQIH TQP GDILVFL
Sbjct: 575 DAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPEANYIQAAITTILQIHTTQPAGDILVFL 634
Query: 319 TGQEEIETCVEMLQERTKRIGKKLRELLILPVYANLPSDMQAKIFEQTPEGARKVVLATN 498
TGQ+EIE E +QE + +GK++ E+++ P+YANLPS++QAKIF+ TP GARKVVLATN
Sbjct: 635 TGQDEIELMSENMQELCRILGKRIPEIILCPIYANLPSELQAKIFDPTPPGARKVVLATN 694
Query: 499 IAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPISKASANQRAGRAGRVAPGKCF 678
IAETS+TID + +VID GF KQN +N +TGMESL+ VP S+ASA+QRAGRAGRV PGKCF
Sbjct: 695 IAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCF 754
Query: 679 RLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQ 858
RLYT Y EL+ T PEIQR NL N VL LK+LGIN+L+ FDF+D PP ETL+ +LE
Sbjct: 755 RLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGINNLLDFDFMDAPPPETLMRSLEL 814
Query: 859 LYALGALNHHGELTKAGRRMAEFPTXPMLAKMWLASEKYNVLKKXVXMAAM 1011
LYALGALN+ GELTK GR+MAEFPT PML+K +AS KY +++ + + +M
Sbjct: 815 LYALGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSM 865
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 361 bits (889), Expect = e-101
Identities = 170/299 (56%), Positives = 228/299 (76%)
Frame = +1
Query: 139 DAEQFSTFFEAAPIFSIPGRXFPVDIXYTKAPEAXYVAACVVSVLQIHATQPLGDILVFL 318
DAE+FS++F PIF+IPGR +PV+I YTK PEA Y+ A +++V+QIH ++ GDILVFL
Sbjct: 667 DAERFSSYFYKCPIFTIPGRSYPVEIMYTKQPEADYLDAALMTVMQIHLSEGPGDILVFL 726
Query: 319 TGQEEIETCVEMLQERTKRIGKKLRELLILPVYANLPSDMQAKIFEQTPEGARKVVLATN 498
TGQEEI+T E+L ER+K +G + EL+ILPVY+ LPS++Q++IFE P G RKVV+ATN
Sbjct: 727 TGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPGGRKVVIATN 786
Query: 499 IAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPISKASANQRAGRAGRVAPGKCF 678
IAETSLTID I YV+DPGF KQ+ F+ K GM+SLIV PIS+A A QR+GRAGR PGKC+
Sbjct: 787 IAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGRTGPGKCY 846
Query: 679 RLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQ 858
RLYT AY+ E+ + +PEIQR NL + +L LKA+GINDL++FDF+DPPP +T++ AL+
Sbjct: 847 RLYTESAYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPAQTMIAALQN 906
Query: 859 LYALGALNHHGELTKAGRRMAEFPTXPMLAKMWLASEKYNVLKKXVXMAAMXSVNSXXS 1035
LYAL AL+ G LT GR+MA+FP P L+K+ + S + ++ + + AM SV + S
Sbjct: 907 LYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNIWS 965
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 316 bits (776), Expect = 4e-87
Identities = 151/296 (51%), Positives = 213/296 (71%)
Frame = +1
Query: 139 DAEQFSTFFEAAPIFSIPGRXFPVDIXYTKAPEAXYVAACVVSVLQIHATQPLGDILVFL 318
++++FS FF AP F+IPGR +PVDI + KAP + YV A V VLQIH +QP GDILVF+
Sbjct: 648 NSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCSDYVEAAVRQVLQIHLSQPAGDILVFM 707
Query: 319 TGQEEIETCVEMLQERTKRIGKKLRELLILPVYANLPSDMQAKIFEQTPEGARKVVLATN 498
TGQE+IE E++ +R ++ R L ILP+Y+ +P+D+QAKIF+ G RKVV+ATN
Sbjct: 708 TGQEDIEATCEIIADRLNQLHDAPR-LSILPIYSQMPADLQAKIFDSAEPGVRKVVVATN 766
Query: 499 IAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPISKASANQRAGRAGRVAPGKCF 678
IAETSLT+ I YV+D G+ K +NSK G+++L V PIS+A+ANQRAGRAGR PG +
Sbjct: 767 IAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQRAGRAGRTGPGIAY 826
Query: 679 RLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQ 858
RLYT AY E+ + T+PEIQR NL N VL LK+LG+ ++ FDF+D PP++TL+ +L +
Sbjct: 827 RLYTEMAYIREMFETTLPEIQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYE 886
Query: 859 LYALGALNHHGELTKAGRRMAEFPTXPMLAKMWLASEKYNVLKKXVXMAAMXSVNS 1026
L+ LGAL++ G+LT G++M+ FP P L+K+ + +E Y ++ + + +M SV S
Sbjct: 887 LWTLGALDNFGKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITIVSMLSVPS 942
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 300 bits (737), Expect = 2e-82
Identities = 152/301 (50%), Positives = 207/301 (68%), Gaps = 7/301 (2%)
Frame = +1
Query: 139 DAEQFSTFFEAAPIFSIPGRXFPVDIXYTKAPEAXYVAACVVSVLQIHATQPLGDILVFL 318
DA++F +F AP+ ++PGR +PV+I YT+ PE Y+ A + +VLQIH + GDILVFL
Sbjct: 233 DAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGDILVFL 292
Query: 319 TGQEEIE-TCVEMLQERTKRIGKKLR-ELLILPVYANLPSDMQAKIFEQTPEGA-----R 477
TG+EEIE C ++ E + + L + P+Y +LP + Q +IFE TPE R
Sbjct: 293 TGEEEIEDACRKITLEADDLVREGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTKSGYGR 352
Query: 478 KVVLATNIAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPISKASANQRAGRAGR 657
KVV++TNIAETSLTID I+YV+DPGF+KQ +N + +ESL+V PISKASA QRAGRAGR
Sbjct: 353 KVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGR 412
Query: 658 VAPGKCFRLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDFLDPPPHET 837
PGKCFRLYT A++ EL + T PEI R NL + VL LK LGI+DL+HFD++DPP ET
Sbjct: 413 TRPGKCFRLYTEEAFRKELIEQTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPPAPET 472
Query: 838 LVLALEQLYALGALNHHGELTKAGRRMAEFPTXPMLAKMWLASEKYNVLKKXVXMAAMXS 1017
++ ALE+L L L+ +G+LT GR+ +EFP P LA M + S ++ + + + A+ S
Sbjct: 473 MMRALEELNYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLS 532
Query: 1018 V 1020
V
Sbjct: 533 V 533
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 279 bits (683), Expect = 7e-76
Identities = 139/296 (46%), Positives = 199/296 (67%)
Frame = +1
Query: 139 DAEQFSTFFEAAPIFSIPGRXFPVDIXYTKAPEAXYVAACVVSVLQIHATQPLGDILVFL 318
+AE+FS FF+ A I I GR +PV I YT PE Y+ AC+ ++ Q+H P GDILVFL
Sbjct: 252 NAERFSEFFDGAEICYISGRQYPVQIHYTYTPEPDYLDACLRTIFQLHTKLPPGDILVFL 311
Query: 319 TGQEEIETCVEMLQERTKRIGKKLRELLILPVYANLPSDMQAKIFEQTPEGARKVVLATN 498
TGQ+EIE +++ +K++ L ++ P++A+LP + Q ++F RKVVL+TN
Sbjct: 312 TGQDEIEALEALIKSYSKQLPSNLPQIQACPLFASLPQEQQLQVFLPALANHRKVVLSTN 371
Query: 499 IAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPISKASANQRAGRAGRVAPGKCF 678
IAETS+TI I YVID G AK FNSK G+ESL V PIS+++A QR+GRAGR A G+C+
Sbjct: 372 IAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRSGRAGREAAGQCY 431
Query: 679 RLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQ 858
R+YT + +L T+PEI+RI+L AVLTLKA G ND+I+F ++DPP E L+ ALE
Sbjct: 432 RIYTEADFD-KLPKETIPEIKRIDLSQAVLTLKARGQNDVINFHYMDPPSKEGLLRALEH 490
Query: 859 LYALGALNHHGELTKAGRRMAEFPTXPMLAKMWLASEKYNVLKKXVXMAAMXSVNS 1026
LY++GAL+ +G + G +M+ P P LA+ LA+ ++N L + + + + S +S
Sbjct: 491 LYSIGALDDNGHINDLGYQMSLIPLLPSLARAVLAAREHNCLSEVIDVVSCLSTDS 546
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 206 bits (502), Expect = 6e-54
Identities = 114/294 (38%), Positives = 173/294 (58%), Gaps = 3/294 (1%)
Frame = +1
Query: 139 DAEQFSTFFEAAPI--FSIPGRXFPVDIXYTKAPEAXYVAACVVSVLQIHATQPLGDILV 312
DA + S FF + SI G+ FPV+ + + P YV + + +V+ I++T P GDILV
Sbjct: 182 DANKLSQFFGQDKVCTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDILV 241
Query: 313 FLTGQEEIETCVEMLQERTKRIGKKLRELLILPVYANLPSDMQAKIFEQTPEGARKVVLA 492
FL+G++EIE C++ +++ + + L+ LP++A L D Q ++F RKV+ +
Sbjct: 242 FLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFS 301
Query: 493 TNIAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPISKASANQRAGRAGRVAPGK 672
TNIAETS+TID I+YV+D GF KQ +N T LI VPISK+SA QR+GRAGR GK
Sbjct: 302 TNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGRTMRGK 361
Query: 673 CFRLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLAL 852
FRLYT AY +++ +I ++ VL LK LG+ +++ F F PP L+ AL
Sbjct: 362 VFRLYTEKAYSL-MKEEFEADILNCDMSPLVLFLKGLGLKNILQFPFFVRPPTVHLMAAL 420
Query: 853 EQLYALGALNHHGELT-KAGRRMAEFPTXPMLAKMWLASEKYNVLKKXVXMAAM 1011
E LY LG L+ G LT G +++ ++K L S ++ + + +A++
Sbjct: 421 EDLYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTSNQFGCTHEILSIASI 474
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 167 bits (406), Expect = 3e-42
Identities = 82/209 (39%), Positives = 132/209 (63%)
Frame = +1
Query: 397 LLILPVYANLPSDMQAKIFEQTPEGARKVVLATNIAETSLTIDNIIYVIDPGFAKQNNFN 576
+ +LP+Y+ L ++ Q K+F+ +PEG R ++ATN+AETS+TI NI YV+D G AK+ +N
Sbjct: 702 MYVLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYN 761
Query: 577 SKTGMESLIVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYKYELEDNTVPEIQRINLG 756
KT ++ V ISKA+A+QRAGRAGR PG C+RLY++ + +++PEI R +
Sbjct: 762 EKTSVQKFEVRWISKANADQRAGRAGRTGPGHCYRLYSSAVFDSSFPLHSLPEILRTPVE 821
Query: 757 NAVLTLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKAGRRMAEFPTX 936
+ VL +K + I+++ +F F P L +L+ L LGA++ G LTK G +M+ FP
Sbjct: 822 SIVLQMKNMNIDNIANFPFPTSPGRSRLEKSLKLLSNLGAIDSEGVLTKLGEQMSLFPLS 881
Query: 937 PMLAKMWLASEKYNVLKKXVXMAAMXSVN 1023
P +KM + +++ L + + + S+N
Sbjct: 882 PRFSKMLIIGQQHGCLPYVIALVSALSIN 910
Score = 56.8 bits (131), Expect = 6e-09
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +1
Query: 175 PIFSIPGRXFPVDIXYTKAPEAXYVAACVVSVLQIHATQPLGDILVFLTGQEEIETCVEM 354
PI I R +PV I + + + Y+ V IH P G ILVFLTGQ+E+E +M
Sbjct: 584 PIIKIDARQYPVSIHFNRTTKPDYLQDAFDKVCLIHKRLPAGSILVFLTGQQEVEQLCQM 643
Query: 355 LQERTKRIGKKLR 393
L++R R + L+
Sbjct: 644 LRKRFVRSFRPLK 656
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 144 bits (349), Expect = 2e-35
Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 2/243 (0%)
Frame = +1
Query: 304 ILVFLTGQEEIETCVEMLQERTKRIGKKLRELLILPVYANLPSDMQAKIFEQTPEGARKV 483
+LVFL G EI ++++ + + R+ I +++ L S Q +F P+G RK+
Sbjct: 906 VLVFLPGISEILRVKSLIEDMP--MFRNHRKFCIYMLHSTLSSAQQQSVFNIPPKGCRKI 963
Query: 484 VLATNIAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPISKASANQRAGRAGRVA 663
VL+TNIAET +TI ++ VID G ++ +NS+ + L +SKA+A QR+GRAGRV
Sbjct: 964 VLSTNIAETGVTIPDVTCVIDTGVHREMRYNSRRHLSRLTDTFVSKANAKQRSGRAGRVQ 1023
Query: 664 PGKCFRLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKALGINDL--IHFDFLDPPPHET 837
G C+ L++ + + + PEI R+NL VL +K + D+ + LDPP
Sbjct: 1024 EGICYHLFSKFKHDTQFLSYQTPEILRLNLQEVVLRVKMCQMGDVQDVLGKALDPPSSTN 1083
Query: 838 LVLALEQLYALGALNHHGELTKAGRRMAEFPTXPMLAKMWLASEKYNVLKKXVXMAAMXS 1017
++ ALE+L+ +GAL+ + +LTK G+ +++ P L K+ + Y + + AM +
Sbjct: 1084 IIRALEKLHQVGALSENEKLTKLGKFLSQLPVDANLGKILVLGCFYKCVDAASSIVAMLT 1143
Query: 1018 VNS 1026
+ S
Sbjct: 1144 IGS 1146
Score = 30.7 bits (66), Expect = 0.42
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 139 DAEQFSTFFEAAPIFSIPGRXFPVDIXY 222
+AE+F +FE + + +IPG+ +PV Y
Sbjct: 794 NAEKFQLYFEGSNLITIPGKTYPVHRFY 821
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 116 bits (279), Expect = 6e-27
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 13/269 (4%)
Frame = +1
Query: 259 VVSVLQIHATQPLGDILVFLTGQEEIETCVEMLQERTKRIGKKLRELLILPVYANLPSDM 438
+VS + G ILVFL G I C+ ++ + G K +LP++A+L +
Sbjct: 801 LVSSIDAELGSSSGSILVFLPGVSNIARCIREIKSKD---GSKFE---VLPLHASLNTSE 854
Query: 439 QAKIFEQTPEGARKVVLATNIAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPIS 618
Q + F+ + RK++ ATNIAETS+TID+++ VID G KQ +++ + + + S
Sbjct: 855 QRRCFKTYTK--RKIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKETWAS 912
Query: 619 KASANQRAGRAGRVAPGKCFRLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKAL----- 783
+A+ QR GRAGRV G C++LYT + + T PE+ R L L + L
Sbjct: 913 RAACQQRRGRAGRVKKGICYKLYTRGFEEKGMLGQTPPEVLRTALSQVCLNVVPLVKRFS 972
Query: 784 ----GIN--DLIHF--DFLDPPPHETLVLALEQLYALGALNHHGELTKAGRRMAEFPTXP 939
+N + F +DPP T+ LAL++L +GAL +LT G + P
Sbjct: 973 SAGNSVNQGSIKKFMNSLIDPPNDATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDL 1032
Query: 940 MLAKMWLASEKYNVLKKXVXMAAMXSVNS 1026
L K+ + + L+ + + A+ S S
Sbjct: 1033 KLGKLLVFGSIFGYLEPALTITAILSTKS 1061
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 31.1 bits (67), Expect = 0.32
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 449 ILACM-SLGKFAYTGNIKSSRSFLPIRFVLSCNISTHVSISSCP 321
IL C+ S FAY + R+ LPI+F ++ + S++ CP
Sbjct: 8 ILICLYSFVTFAYPKVTQDYRNHLPIKFAKRSEVTPNTSLAQCP 51
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 475 RKVVLATNIAETSLTIDNIIYVIDPGFA----KQNNFNSKTGMESLIVVPISKASANQRA 642
RK +I+ T LT+D + V DP K+ KT S + P+S+ S+ R+
Sbjct: 1446 RKRRRRNSISYTELTLDELNTVDDPSSTLMPRKRGRPRKKTNSGSSLSTPLSQESSLARS 1505
Query: 643 GR 648
GR
Sbjct: 1506 GR 1507
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +1
Query: 493 TNIAETSLTIDNIIYVIDP------GFAKQNNFNSKTGMESLIVVPISKASANQRAG 645
T I + +LT +N++Y P GF NFN G S I ++K N+++G
Sbjct: 619 TIIYKENLTAENLLYPKCPNETAIIGFVTTGNFNLNAGKPSGIANVLAKTIKNEKSG 675
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = -2
Query: 468 FRSLFKDFS----LHVTRQICIYW*Y*KLAQFFAYTLRPF 361
F ++F D S LH +YW + QFFAY + F
Sbjct: 819 FLNIFTDLSSTDFLHKVNVFAVYWLILAIVQFFAYAISNF 858
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 679 RLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDFLDPPPH 831
RL Y YE+E + E + G VL + ++ +ND+ + F+D H
Sbjct: 400 RLLQLTDYHYEVEAKNI-EFLKYRFGETVLQMCSVMLNDIENSRFIDQSIH 449
>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -2
Query: 501 YICS-KNDFSSSFRSLFKD--FSLHVTRQICIY 412
+IC+ +ND+ S F LF D F+ + RQ+ +Y
Sbjct: 195 WICAVRNDYGSMFSGLFSDTTFTKSLVRQVKLY 227
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = -3
Query: 620 LEMGTTIKLSMPVLELKLFCLAKPGSITYII---LSIVNEVSAIFVARTTFLAPSGVCSK 450
L +GT ++ + VL LFC+A +I + + NEVS ++ + P + +
Sbjct: 272 LNVGTPLQRKLTVLAYILFCIAIILAIIVMAAHSFHVTNEVSIYAISLGISIIPESLIAV 331
Query: 449 ILACMSLGK 423
+ M++G+
Sbjct: 332 LSITMAMGQ 340
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 623 ALEMGTTIKLSMPVLELKLFCLAKPGSITYI 531
A + T KLSMP+LE+KL+ S+ YI
Sbjct: 118 ASRLYTRQKLSMPMLEVKLYIYQLLRSLAYI 148
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 26.2 bits (55), Expect = 9.0
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +1
Query: 454 EQTPEGARKVVLATNIAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPISKASAN 633
+Q P+G R ++LAT T L+ ++ D A N ++ T ++ +I S A +N
Sbjct: 681 KQPPKGHRLLILATTSERTMLSRMDMTQSFDAEIAVP-NVSNVTELDRIIQSIDSFADSN 739
Query: 634 QRAGRAGRV 660
RA R+
Sbjct: 740 VRADTLQRL 748
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,091,539
Number of Sequences: 5004
Number of extensions: 78420
Number of successful extensions: 245
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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