Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D13
         (1303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.26 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.26 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.35 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   4.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   6.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    22   8.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
 Frame = +3

Query: 456 PMGXXXGXPQXXPPPPPPPXXXXG--*XPPXGXXXPPP 563
           P+G         PPPPPP     G    PP G   PPP
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 492 PPPPPPPXXXXG*XPPXG 545
           PPPPPPP       PP G
Sbjct: 311 PPPPPPPSRRNRGKPPIG 328



 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
 Frame = -2

Query: 483 AGPXXPXPXAXPXSPXXSPXXXPXP--XPPPPPXLXPTXLSP 364
           A P  P     P  P   P   P P   P PPP   P   +P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 492 PPPPPPPXXXXG*XPPXGXXXPP 560
           PPPPPPP    G  PP     PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 492 PPPPPPPXXXXG*XPPXGXXXPPP 563
           PPPPPPP       PP     PPP
Sbjct: 762 PPPPPPPGVAGAGPPP--PPPPPP 783



 Score = 25.0 bits (52), Expect(2) = 1.1
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
 Frame = +3

Query: 492 PPPPPPPXXXXG---*XPPXGXXXPPPKXGE 575
           PPPPPPP    G      P     P PK  E
Sbjct: 777 PPPPPPPAVSAGGSRYYAPAPQAEPEPKIDE 807



 Score = 22.6 bits (46), Expect(2) = 1.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 456 PMGXXXGXPQXXPPPPP 506
           P G     P   PPPPP
Sbjct: 767 PPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 480 PQXXPPPPPPPXXXXG*XPPXGXXXPPP 563
           P   PPPPPPP    G  PP     PPP
Sbjct: 5   PPGNPPPPPPPP---GFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 462 PXAXPXSPXXSPXXXPXPXPPPPP 391
           P   P  P   P   P   PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 498 PPPPPXXXXG*XPPXGXXXPPPKXGE 575
           PPPPP        P     PPPK GE
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGE 933


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 456  PMGXXXGXPQXXPPPPPPP 512
            P+      P   PPPPPPP
Sbjct: 1083 PVANNVSKPSAVPPPPPPP 1101


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -2

Query: 462 PXAXPXSPXXSPXXXPXPXPPPPPXLXP 379
           P   P          P P PPPPP L P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPP 248


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = -2

Query: 477 PXXPXPXAXPXSPXXSPXXXPX---PXPPPPPXLXPTXLS 367
           P    P A P +P  SP   P      PP PP + P  LS
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLS 207


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = -2

Query: 483  AGPXXPXPXAXPXSPXXSPXXXPXPXPP-PPPXLXPTXLSP 364
            A P  P P   P  P  S    P P P   PP   P+  +P
Sbjct: 1129 AAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 6.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 417 PXPXPPPPP 391
           P P PPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 21.8 bits (44), Expect(2) = 6.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 411 PXPPPPPXL 385
           P PPPPP L
Sbjct: 946 PPPPPPPPL 954


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 22.2 bits (45), Expect(2) = 8.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 483  QXXPPPPPP 509
            Q  PPPPPP
Sbjct: 1879 QAAPPPPPP 1887



 Score = 22.2 bits (45), Expect(2) = 8.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 495  PPPPPPXXXXG*XPP 539
            PPPPPP       PP
Sbjct: 1882 PPPPPPMALPKAGPP 1896


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 468  PXPXAXPXSPXXSPXXXPXPXPPPPP 391
            P P + P  P   P     P  PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.143    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,197
Number of Sequences: 5004
Number of extensions: 20215
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)