Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D13
         (1303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.28 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect(2) = 0.28
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 459 MGXXXGXPQXXPPPPPP 509
           +G     P+  PPPPPP
Sbjct: 332 LGDSDTPPKPAPPPPPP 348



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 417 PXPXPPPPP 391
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 21.4 bits (43), Expect(2) = 0.28
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 492 PPPPPPPXXXXG 527
           P PPPPP    G
Sbjct: 341 PAPPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 483  QXXPPPPPPP 512
            Q  PPPPPPP
Sbjct: 1352 QQQPPPPPPP 1361



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 483  QXXPPPPPPP 512
            Q  PPPPPPP
Sbjct: 1353 QQPPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 481  RKXXPPPPPPXXXXG 525
            R+  PPPPPP    G
Sbjct: 1351 RQQQPPPPPPPPSSG 1365


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = -2

Query: 480 GPXXPXPXAXPXSPXXSPXXXPXPXPPP--PPXLXPT 376
           GP  P P   P +P       P   PPP  PP   P+
Sbjct: 22  GPQ-PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.143    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,760
Number of Sequences: 438
Number of extensions: 6597
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44783499
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)