Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D12
         (1361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0230 + 26585439-26586608                                         31   2.8  
05_06_0227 + 26565169-26566380                                         29   6.4  
02_01_0302 - 2021221-2023305                                           29   8.5  

>05_06_0230 + 26585439-26586608
          Length = 389

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 428 LGXRLXAWRVAXSXXXPPXPXARRPWPXALLPSTLGXP 541
           +G    +WRVA +   PP P    PW   LLP   G P
Sbjct: 1   MGRACHSWRVALAKLEPPAPSPPLPW--LLLPRADGPP 36


>05_06_0227 + 26565169-26566380
          Length = 403

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 446 AWRVAXSXXXPPXPXARRPWPXALLPSTLG 535
           +WRVA +   PP P    P P  LLP   G
Sbjct: 34  SWRVALTKAEPPAPPPPPPLPWLLLPEVDG 63


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 16/69 (23%), Positives = 20/69 (28%)
 Frame = -3

Query: 1353 PXXXAPXXXXXXPXXHXXPXGXXXSDXXGPSPXXXXXXPPXXXRGXGQXXPAXGXPPPGE 1174
            P   +P      P  H  P G   +    PSP       P      G   P+   PP   
Sbjct: 442  PSYPSPPSSATTPSSHSPPGGSSSTTPSYPSPNGGKPSTPSHPSPPGSTTPSYPSPPSSS 501

Query: 1173 XXXXXXTPP 1147
                  +PP
Sbjct: 502  TTPSYHSPP 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,797,280
Number of Sequences: 37544
Number of extensions: 250424
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4295031588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)