Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D12
         (1361 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing f...    32   4.2  
BC051192-1|AAH51192.1|  707|Homo sapiens splicing factor proline...    32   4.2  
BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.         32   4.2  
BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.         32   4.2  
AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor proline...    32   4.2  

>X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing factor
            protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 4.2
 Identities = 32/127 (25%), Positives = 33/127 (25%), Gaps = 1/127 (0%)
 Frame = -3

Query: 1269 GPSPXXXXXXPPXXXRGXGQXXPAXGXPPPGEXXXXXXT-PPGXTLXAXGRXYXXTXXRX 1093
            GP P       P          P     PPG       T PP  T    G          
Sbjct: 114  GPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSG 173

Query: 1092 DXXKSXXAGXPXXPPXXXKRXXLGPXPXPXXXTTXXXPXGXAPXAPKXPTRGGAXXXXAP 913
                   AG P  PP        GP P P        P G     P  P  GG      P
Sbjct: 174  VPTTPPQAGGPPPPPAAVP----GPGPGPKQGPGPGGPKGG--KMPGGPKPGGGPGLSTP 227

Query: 912  XGXHXEP 892
             G H +P
Sbjct: 228  -GGHPKP 233


>BC051192-1|AAH51192.1|  707|Homo sapiens splicing factor
            proline/glutamine-rich (polypyrimidine tract binding
            protein as protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 4.2
 Identities = 32/127 (25%), Positives = 33/127 (25%), Gaps = 1/127 (0%)
 Frame = -3

Query: 1269 GPSPXXXXXXPPXXXRGXGQXXPAXGXPPPGEXXXXXXT-PPGXTLXAXGRXYXXTXXRX 1093
            GP P       P          P     PPG       T PP  T    G          
Sbjct: 114  GPGPAPGVGSTPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSG 173

Query: 1092 DXXKSXXAGXPXXPPXXXKRXXLGPXPXPXXXTTXXXPXGXAPXAPKXPTRGGAXXXXAP 913
                   AG P  PP        GP P P        P G     P  P  GG      P
Sbjct: 174  VPTTPPQAGGPPPPPAAVP----GPGPGPKQGPGPGGPKGG--KMPGGPKPGGGPGLSTP 227

Query: 912  XGXHXEP 892
             G H +P
Sbjct: 228  -GGHPKP 233


>BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.
          Length = 525

 Score = 32.3 bits (70), Expect = 4.2
 Identities = 32/127 (25%), Positives = 33/127 (25%), Gaps = 1/127 (0%)
 Frame = -3

Query: 1269 GPSPXXXXXXPPXXXRGXGQXXPAXGXPPPGEXXXXXXT-PPGXTLXAXGRXYXXTXXRX 1093
            GP P       P          P     PPG       T PP  T    G          
Sbjct: 114  GPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSG 173

Query: 1092 DXXKSXXAGXPXXPPXXXKRXXLGPXPXPXXXTTXXXPXGXAPXAPKXPTRGGAXXXXAP 913
                   AG P  PP        GP P P        P G     P  P  GG      P
Sbjct: 174  VPTTPPQAGGPPPPPAAVP----GPGPGPKQGPGPGGPKGG--KMPGGPKPGGGPGLSTP 227

Query: 912  XGXHXEP 892
             G H +P
Sbjct: 228  -GGHPKP 233


>BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.
          Length = 634

 Score = 32.3 bits (70), Expect = 4.2
 Identities = 32/127 (25%), Positives = 33/127 (25%), Gaps = 1/127 (0%)
 Frame = -3

Query: 1269 GPSPXXXXXXPPXXXRGXGQXXPAXGXPPPGEXXXXXXT-PPGXTLXAXGRXYXXTXXRX 1093
            GP P       P          P     PPG       T PP  T    G          
Sbjct: 41   GPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSG 100

Query: 1092 DXXKSXXAGXPXXPPXXXKRXXLGPXPXPXXXTTXXXPXGXAPXAPKXPTRGGAXXXXAP 913
                   AG P  PP        GP P P        P G     P  P  GG      P
Sbjct: 101  VPTTPPQAGGPPPPPAAVP----GPGPGPKQGPGPGGPKGG--KMPGGPKPGGGPGLSTP 154

Query: 912  XGXHXEP 892
             G H +P
Sbjct: 155  -GGHPKP 160


>AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor
            proline/glutamine-rich (polypyrimidine tract binding
            protein as protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 4.2
 Identities = 32/127 (25%), Positives = 33/127 (25%), Gaps = 1/127 (0%)
 Frame = -3

Query: 1269 GPSPXXXXXXPPXXXRGXGQXXPAXGXPPPGEXXXXXXT-PPGXTLXAXGRXYXXTXXRX 1093
            GP P       P          P     PPG       T PP  T    G          
Sbjct: 114  GPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSG 173

Query: 1092 DXXKSXXAGXPXXPPXXXKRXXLGPXPXPXXXTTXXXPXGXAPXAPKXPTRGGAXXXXAP 913
                   AG P  PP        GP P P        P G     P  P  GG      P
Sbjct: 174  VPTTPPQAGGPPPPPAAVP----GPGPGPKQGPGPGGPKGG--KMPGGPKPGGGPGLSTP 227

Query: 912  XGXHXEP 892
             G H +P
Sbjct: 228  -GGHPKP 233


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,172,225
Number of Sequences: 237096
Number of extensions: 1561661
Number of successful extensions: 2050
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2010
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 19731288240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)