Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D11
         (1276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...   154   3e-38
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    28   3.2  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    27   7.3  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 330

 Score =  154 bits (373), Expect = 3e-38
 Identities = 73/189 (38%), Positives = 113/189 (59%)
 Frame = +3

Query: 492  FSMLTQNVTNNIALVXMMANKLKGEMMDLQHGSAFMXNAKIQSSTDYSITAGSKICVVTA 671
            F++L   +   I ++ +   K +GE MDL H +      ++    DY     +   V+TA
Sbjct: 37   FTLLLSGLAAEIVIIDLNKKKAEGEAMDLNHAAPLSHETRVYLG-DYKDCKDATAVVITA 95

Query: 672  GVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASDPVDILTYVTWKISGLPKH 851
            G  Q+ GE+R+DL++ N  + K+I+ ++ KY+ D IL++A++PVD+LTY T K++G P  
Sbjct: 96   GKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLVATNPVDVLTYATLKLTGFPAE 155

Query: 852  RVIGSGTDLDSARFRYLLSDRLGIATTSCHGYIIGEHGXSSVPVWSAVNIAGVRLXDLXN 1031
            RVIGSGT +D+ARF+YL+    G+   S +  IIGEHG S + VWS  +IAG+ L D   
Sbjct: 156  RVIGSGTIIDTARFQYLIGKLYGLDPQSVNADIIGEHGDSELAVWSHASIAGLSLADFCE 215

Query: 1032 XIGTXXDPE 1058
               T  D +
Sbjct: 216  ESETKYDEQ 224


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 839 PANLPRNIRQNIHGVTGDHQYCVRTVLYQLRDYLFKHIGVSLHEIETR 696
           P  LPR ++  +HG  GD  Y  R    +    +F    +    +E++
Sbjct: 56  PLELPRKLKVYLHGPPGDGIYVAREEFEEYIRPIFNAAAIEFETVESK 103


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 726 DVLKQIIPQLIKYSPDTILVIASDPVDIL 812
           D+L+++ P+ I  + DTIL +A D  D+L
Sbjct: 9   DLLRRLNPKDISKNLDTILSVAPDLADVL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,568,296
Number of Sequences: 5004
Number of extensions: 62656
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)