Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D11
(1276 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0042 + 295608-296222,298479-298925 200 2e-51
06_01_0033 - 346273-347355 194 9e-50
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 52 7e-07
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 50 5e-06
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 47 3e-05
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 43 5e-04
08_01_0567 - 5040389-5040631,5042124-5042264 36 0.052
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 31 2.6
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 29 7.8
01_05_0395 + 21739350-21740165 29 7.8
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 200 bits (488), Expect = 2e-51
Identities = 86/172 (50%), Positives = 132/172 (76%)
Frame = +3
Query: 495 SMLTQNVTNNIALVXMMANKLKGEMMDLQHGSAFMXNAKIQSSTDYSITAGSKICVVTAG 674
++LT+++ + IALV + +KL+GEM+DLQH +AF+ ++ S TD ++T GS + +VTAG
Sbjct: 57 TILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRVRLVSDTDLAVTRGSDLAIVTAG 116
Query: 675 VRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASDPVDILTYVTWKISGLPKHR 854
RQ GESRL+L+QRN + ++I+P L ++SP+ +L+I S+PVD+LTYV WK+SG P R
Sbjct: 117 ARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNPVDVLTYVAWKLSGFPASR 176
Query: 855 VIGSGTDLDSARFRYLLSDRLGIATTSCHGYIIGEHGXSSVPVWSAVNIAGV 1010
VIGSGT+LDS+RFR+LL++ L + Y++GEHG SSV +WS++++AG+
Sbjct: 177 VIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGDSSVAIWSSMSVAGM 228
>06_01_0033 - 346273-347355
Length = 360
Score = 194 bits (474), Expect = 9e-50
Identities = 83/172 (48%), Positives = 129/172 (75%)
Frame = +3
Query: 495 SMLTQNVTNNIALVXMMANKLKGEMMDLQHGSAFMXNAKIQSSTDYSITAGSKICVVTAG 674
++LTQ++ + I L+ +A+K++GEM+DLQH +AF+ I S T+ S+T S + +VTAG
Sbjct: 56 TILTQDLADEIVLIDAVADKVRGEMLDLQHAAAFLPRVNIVSGTEVSLTRSSDLVIVTAG 115
Query: 675 VRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASDPVDILTYVTWKISGLPKHR 854
RQ GE+RL+L+QRN + ++I+P + SP+++LVI S+PVD+LTYV WK+SG P R
Sbjct: 116 ARQIPGETRLNLLQRNVSLFRKIVPAAAEASPESVLVIVSNPVDVLTYVAWKLSGFPASR 175
Query: 855 VIGSGTDLDSARFRYLLSDRLGIATTSCHGYIIGEHGXSSVPVWSAVNIAGV 1010
VIGSGT+LDS+RFR+LL++ L ++ Y++GEHG SSV +WS++++ G+
Sbjct: 176 VIGSGTNLDSSRFRFLLAEHLEVSAQDVQAYMVGEHGDSSVALWSSISVGGM 227
>01_06_0072 + 26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 52.4 bits (120), Expect = 7e-07
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Frame = +3
Query: 645 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASDPVDILTYV- 821
GS I ++ AGV ++ G +R DL N ++K + + KY P+ ++ + S+PV+ +
Sbjct: 95 GSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPNALVNMISNPVNSTVPIA 154
Query: 822 --TWKISGLPKHRVIGSGTDLDSARFRYLLSDRLGIATTSCHGYIIGEH-GXSSVPVWSA 992
+K +G + + T LD R + + + + T + ++G H G + +P++S
Sbjct: 155 AEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTDVNVPVVGGHAGITILPLFSQ 214
Query: 993 VNIAGVRLXD 1022
A L D
Sbjct: 215 ATPATNALSD 224
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 49.6 bits (113), Expect = 5e-06
Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Frame = +3
Query: 645 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASDPVDILTYV- 821
GS + ++ AGV ++ G +R DL N ++K + + KY P+ ++ + S+PV+ +
Sbjct: 94 GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVNSTVPIA 153
Query: 822 --TWKISGLPKHRVIGSGTDLDSARFRYLLSDRLGIATTSCHGYIIGEH-GXSSVPVWS 989
+K +G + + T LD R + + + + T + ++G H G + +P++S
Sbjct: 154 AEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGHAGITILPLFS 212
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 47.2 bits (107), Expect = 3e-05
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Frame = +3
Query: 645 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASDPVD----IL 812
G + ++ AG+ ++ G +R DL +N +++ + + K P+ I+ + S+PV+ I
Sbjct: 110 GMDLVIIPAGLPRKPGMTRDDLFNKNAGIVRSLCEGVAKCCPNAIVNLISNPVNSTVPIA 169
Query: 813 TYVTWKISGLPKHRVIGSGTDLDSARFRYLLSDRLGIATTSCHGYIIGEH-GXSSVPVWS 989
V K R++G T LD AR +++ LGI + ++G H G + +P+ S
Sbjct: 170 AEVFKKAGTYDPKRLLGV-TTLDVARANTFVAEVLGIDPKDVNVPVVGGHAGVTILPLLS 228
Query: 990 AVN 998
V+
Sbjct: 229 QVH 231
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 43.2 bits (97), Expect = 5e-04
Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 2/160 (1%)
Frame = +3
Query: 507 QNVTNNIALVXMMANKLKGEMMDLQHGSAFMXNAKIQSSTDYSITAGSKICVVTAGVRQR 686
Q V ++ + + AN L G M+L + + + +S + G + +V G +R
Sbjct: 71 QPVVLHLLDLPVAANALNGVRMELIDAALPLLRGVVATSDEAEAFKGVNVAIVIGGWPRR 130
Query: 687 EGESRLDLVQRNTDVLKQIIPQLIKY-SPDTILVIASDPVDILTYVTWKISGLPKHRVIG 863
+G R DL+ +N + K L ++ +P+ +++ ++P + V + + + I
Sbjct: 131 DGMERKDLISKNVTIYKSQASALHQHAAPNCKVLVVANPANTNALVLKEFAPAIPAKNIT 190
Query: 864 SGTDLDSARFRYLLSDRLGIATTSCHGYII-GEHGXSSVP 980
T LD R ++++L + II G H + P
Sbjct: 191 CLTRLDHNRALGQVAEKLNVHVGDVKNAIIWGNHSSTQFP 230
>08_01_0567 - 5040389-5040631,5042124-5042264
Length = 127
Score = 36.3 bits (80), Expect = 0.052
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Frame = +3
Query: 696 SRLDLVQRN--TDVLKQIIPQLIKYSPDTILVIASDPV--DILTYV 821
++L+L++ N +L +I+P L + SP+ LV+ SDP D+LTYV
Sbjct: 3 TKLELMRSNYLKKLLTEIVPALAENSPEAALVVVSDPPVDDVLTYV 48
>02_05_1331 +
35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 776 CVRTVLYQLRDYLFKHIGVSLHEIETRFTFALSNTSSNHADLRASCY 636
CVR + +LRDY G S ++E F + N D+ SCY
Sbjct: 630 CVRALKNELRDYSANEWGDSKLKLEPEPIFIIDIIEENGEDIVQSCY 676
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 331 HLCAGAXQH-QRALRALPQAGVPVSSCSSPCTRRWTQLGARXPLSGSVRLGWPQLS 495
H CA +H +R R + VP++ + P + + +R P+S + G P S
Sbjct: 180 HWCANCQEHRERTGRLAENSAVPMTVVNPPAVQEMSMAESRGPVSPGMENGAPSNS 235
>01_05_0395 + 21739350-21740165
Length = 271
Score = 29.1 bits (62), Expect = 7.8
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 161 FAVLFSVCVGFVFA 202
FA LF VC+GFVFA
Sbjct: 215 FAALFGVCIGFVFA 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,795,449
Number of Sequences: 37544
Number of extensions: 463812
Number of successful extensions: 1174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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