Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D10
         (1230 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     25   1.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   2.7  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   4.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   6.2  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 983  NIXSHSPHXTHLQFTKI 1033
            N  +HSPH +H+QF ++
Sbjct: 103  NGYNHSPHLSHMQFMQL 119


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 199 FVGAXKECXLGERQHDLEKRTPFDFXNERXQDKKRRV*TIW 77
           +V   + C L  + +  E      F N R +DK++R+   W
Sbjct: 95  YVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQRMAIAW 135


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 198 LSAPXKSVXWGRDNTTWKREHHLIFXT 118
           ++A    + WG  +T W+RE+  +  T
Sbjct: 213 IAAENSPLYWGGADTPWQREYENVNST 239


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 679  QKLLYINESGKYVH 720
            +K L +NESGK +H
Sbjct: 1385 EKNLQVNESGKLIH 1398


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,030
Number of Sequences: 336
Number of extensions: 3345
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35966350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)